Literature DB >> 10446256

Use of a linear multicopy vector based on the mini-replicon of temperate coliphage N15 for cloning DNA with abnormal secondary structures.

N V Ravin1, V K Ravin.   

Abstract

A new cloning vector pN15L is described. It is a linear 13.8 kb plasmid based on the coliphage N15 mini-replicon. The vector capacity exceeds 50 kb and the copy number is 250 per Escherichia coli chromosome. We show that some artificial and natural palindromes and approximately 5% of human DNA Bgl II fragments can be cloned effectively in linear vector pN15L, whereas they either sharply reduce the copy number of circular vector pUC19 or cannot be cloned at all. We conclude that pN15L may be usefully employed to clone large imperfect palindromes and some abnormal sequences of human DNA.

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Year:  1999        PMID: 10446256      PMCID: PMC148574          DOI: 10.1093/nar/27.17.e13

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Bidirectional replication from an internal ori site of the linear N15 plasmid prophage.

Authors:  Nikolai V Ravin; Victor V Kuprianov; Eddie B Gilcrease; Sherwood R Casjens
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

2.  Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.

Authors:  Jetty S S Ammiraju; Yeisoo Yu; Meizhong Luo; Dave Kudrna; HyeRan Kim; Jose L Goicoechea; Yuichi Katayose; Takashi Matsumoto; Jianzhong Wu; Takuji Sasaki; Rod A Wing
Journal:  Theor Appl Genet       Date:  2005-11-10       Impact factor: 5.699

3.  The repA gene of the linear Yersinia enterocolitica prophage PY54 functions as a circular minimal replicon in Escherichia coli.

Authors:  Günter Ziegelin; Nicole Tegtmeyer; Rudi Lurz; Stefan Hertwig; Jens Hammerl; Bernd Appel; Erich Lanka
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

4.  Dependence of transcription-coupled DNA supercoiling on promoter strength in Escherichia coli topoisomerase I deficient strains.

Authors:  Xiaoduo Zhi; Fenfei Leng
Journal:  Gene       Date:  2012-11-29       Impact factor: 3.688

5.  Segments missing from the draft human genome sequence can be isolated by transformation-associated recombination cloning in yeast.

Authors:  Natalay Kouprina; Sun-Hee Leem; Greg Solomon; Albert Ly; Maxim Koriabine; John Otstot; Eugene Pak; Amalia Dutra; Shaying Zhao; J Carl Barrett; Vladimir Larionov
Journal:  EMBO Rep       Date:  2003-03       Impact factor: 8.807

6.  A scalable pipeline for highly effective genetic modification of a malaria parasite.

Authors:  Claudia Pfander; Burcu Anar; Frank Schwach; Thomas D Otto; Mathieu Brochet; Katrin Volkmann; Michael A Quail; Arnab Pain; Barry Rosen; William Skarnes; Julian C Rayner; Oliver Billker
Journal:  Nat Methods       Date:  2011-10-23       Impact factor: 28.547

7.  BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

Authors:  Daniela Schulte; Ruvini Ariyadasa; Bujun Shi; Delphine Fleury; Chris Saski; Michael Atkins; Pieter deJong; Cheng-Cang Wu; Andreas Graner; Peter Langridge; Nils Stein
Journal:  BMC Genomics       Date:  2011-05-19       Impact factor: 3.969

8.  Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli.

Authors:  Ronald Godiska; David Mead; Vinay Dhodda; Chengcang Wu; Rebecca Hochstein; Attila Karsi; Karen Usdin; Ali Entezam; Nikolai Ravin
Journal:  Nucleic Acids Res       Date:  2009-12-29       Impact factor: 16.971

  8 in total

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