Literature DB >> 10446234

Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state.

J Kypr1, J Chládková, M Zimulová, M Vorlícková.   

Abstract

We took 28 fragments of DNA whose crystal structures were known and used CD spectroscopy to search for conditions stabilising the crystal structures in solution. All 28 fragments switched into their crystal structures in 60-80% aqueous trifluorethanol (TFE) to indicate that the crystals affected the conformation of DNA like the concentrated TFE. The fragments crystallising in the B-form also underwent cooperative TFE-induced changes that took place within the wide family of B-form structures, suggesting that the aqueous and crystal B-forms differed as well. Spermine and magnesium or calcium cations, which were contained in the crystallisation buffers, promoted or suppressed the TFE-induced changes of several fragments to indicate that the crystallisation agents can decide which of the possible structures is adopted by the DNA fragment in the crystal.

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Year:  1999        PMID: 10446234      PMCID: PMC148588          DOI: 10.1093/nar/27.17.3466

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  The fragile X chromosome (GCC) repeat folds into a DNA tetraplex at neutral pH.

Authors:  P Fojtík; M Vorlícková
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

2.  Solution structure of the Dickerson DNA dodecamer containing a single ribonucleotide.

Authors:  Eugene F DeRose; Lalith Perera; Michael S Murray; Thomas A Kunkel; Robert E London
Journal:  Biochemistry       Date:  2012-03-14       Impact factor: 3.162

3.  Characterization of the structural and protein recognition properties of hybrid PNA-DNA four-way junctions.

Authors:  Douglas Iverson; Crystal Serrano; Ann Marie Brahan; Arik Shams; Filbert Totsingan; Anthony J Bell
Journal:  Arch Biochem Biophys       Date:  2015-09-05       Impact factor: 4.013

4.  Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET.

Authors:  Tomás Fessl; Frantisek Adamec; Tomás Polívka; Silvie Foldynová-Trantírková; Frantisek Vácha; Lukás Trantírek
Journal:  Nucleic Acids Res       Date:  2012-04-28       Impact factor: 16.971

5.  Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats.

Authors:  Michaela Vorlícková; Jana Chládková; Iva Kejnovská; Markéta Fialová; Jaroslav Kypr
Journal:  Nucleic Acids Res       Date:  2005-10-12       Impact factor: 16.971

6.  Mapping the B-A conformational transition along plasmid DNA.

Authors:  Karel Nejedlý; Jana Chládková; Michaela Vorlíckov; Iva Hrabcová; Jaroslav Kypr
Journal:  Nucleic Acids Res       Date:  2005-01-07       Impact factor: 16.971

Review 7.  Circular dichroism and conformational polymorphism of DNA.

Authors:  Jaroslav Kypr; Iva Kejnovská; Daniel Renciuk; Michaela Vorlícková
Journal:  Nucleic Acids Res       Date:  2009-02-03       Impact factor: 16.971

  7 in total

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