Literature DB >> 10441740

Construction and optimization of a dog whole-genome radiation hybrid panel.

F Vignaux1, C Hitte, C Priat, J C Chuat, C Andre, F Galibert.   

Abstract

A dog whole-genome radiation hybrid (WGRH) panel including 126 clones was constructed by fusing dog fibroblasts irradiated at 5000 rads with thymidine kinase-deficient hamster cells. The average retention frequency of the panel designated as RHDF5000 is 21%, and its resolution power is estimated at 600 kb. The data provided by typing 400 markers were used to estimate linkage power changes subsequent to panel reduction. These changes were analyzed by recomputing typing data from five reduced panels. From these simulations, the parameters allowing investigation of the evolution of the linkage power in the course of panel reduction were determined. Guidelines for constructing a WGRH panel are proposed.

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Year:  1999        PMID： 10441740     DOI： 10.1007/s003359901109

Source DB:  PubMed          Journal:  Mamm Genome        ISSN： 0938-8990            Impact factor:   2.957


  20 in total

1.  Interspersed repetitive sequence (IRS)-PCR for typing of whole genome radiation hybrid panels.

Authors:  H Himmelbauer; L C Schalkwyk; H Lehrach
Journal:  Nucleic Acids Res       Date:  2000-01-15       Impact factor: 16.971

2.  High-resolution radiation hybrid map of wheat chromosome 1D.

Authors:  Venu Kalavacharla; Khwaja Hossain; Yong Gu; Oscar Riera-Lizarazu; M Isabel Vales; Suresh Bhamidimarri; Jose L Gonzalez-Hernandez; Shivcharan S Maan; Shahryar F Kianian
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

3.  A comprehensive linkage map of the dog genome.

Authors:  Aaron K Wong; Alison L Ruhe; Beth L Dumont; Kathryn R Robertson; Giovanna Guerrero; Sheila M Shull; Janet S Ziegle; Lee V Millon; Karl W Broman; Bret A Payseur; Mark W Neff
Journal:  Genetics       Date:  2009-12-04       Impact factor: 4.562

4.  Radiation hybrid mapping of the canine type I and type IV collagen gene subfamilies.

Authors:  Jennifer K Lowe; Richard Guyon; Melissa L Cox; Dianne C Mitchell; Amy L Lonkar; Frode Lingaas; Catherine André; Francis Galibert; Elaine A Ostrander; Keith E Murphy
Journal:  Funct Integr Genomics       Date:  2003-03-27       Impact factor: 3.410

5.  Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes.

Authors:  M Breen; S Jouquand; C Renier; C S Mellersh; C Hitte; N G Holmes; A Chéron; N Suter; F Vignaux; A E Bristow; C Priat; E McCann; C André; S Boundy; P Gitsham; R Thomas; W L Bridge; H F Spriggs; E J Ryder; A Curson; J Sampson; E A Ostrander; M M Binns; F Galibert
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

6.  A 1-Mb resolution radiation hybrid map of the canine genome.

Authors:  Richard Guyon; Travis D Lorentzen; Christophe Hitte; Lisa Kim; Edouard Cadieu; Heidi G Parker; Pascale Quignon; Jennifer K Lowe; Corinne Renier; Boris Gelfenbeyn; Françoise Vignaux; Hawkins B DeFrance; Stephanie Gloux; Gregory G Mahairas; Catherine André; Francis Galibert; Elaine A Ostrander
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-16       Impact factor: 11.205

7.  Production and characterization of maize chromosome 9 radiation hybrids derived from an oat-maize addition line.

Authors:  O Riera-Lizarazu; M I Vales; E V Ananiev; H W Rines; R L Phillips
Journal:  Genetics       Date:  2000-09       Impact factor: 4.562

8.  Radiation hybrid mapping of the species cytoplasm-specific (scsae) gene in wheat.

Authors:  Khwaja G Hossain; Oscar Riera-Lizarazu; Venugopal Kalavacharla; M Isabel Vales; Schivcharan S Maan; Shahryar F Kianian
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

9.  Survey sequencing and radiation hybrid mapping to construct comparative maps.

Authors:  Christophe Hitte; Ewen F Kirkness; Elaine A Ostrander; Francis Galibert
Journal:  Methods Mol Biol       Date:  2008

10.  Breed distribution and history of canine mdr1-1Delta, a pharmacogenetic mutation that marks the emergence of breeds from the collie lineage.

Authors:  Mark W Neff; Kathryn R Robertson; Aaron K Wong; Noa Safra; Karl W Broman; Montgomery Slatkin; Katrina L Mealey; Niels C Pedersen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-02       Impact factor: 11.205
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