Literature DB >> 10427018

Abr1, a transposon-like element in the genome of the cultivated mushroom Agaricus bisporus (Lange) Imbach.

A S Sonnenberg1, J J Baars, T S Mikosch, P J Schaap, L J Van Griensven.   

Abstract

A 300-bp repetitive element was found in the genome of the white button mushroom, Agaricus bisporus, and designated Abr1. It is present in approximately 15 copies per haploid genome in the commercial strain Horst U1. Analysis of seven copies showed 89 to 97% sequence identity. The repeat has features typical of class II transposons (i.e., terminal inverted repeats, subterminal repeats, and a target site duplication of 7 bp). The latter shows a consensus sequence. When used as probe on Southern blots, Abr1 identifies relatively little variation within traditional and present-day commercial strains, indicating that most strains are identical or have a common origin. In contrast to these cultivars, high variation is found among field-collected strains. Furthermore, a remarkable difference in copy numbers of Abr1 was found between A. bisporus isolates with a secondarily homothallic life cycle and those with a heterothallic life cycle. Abr1 is a type II transposon not previously reported in basidiomycetes and appears to be useful for the identification of strains within the species A. bisporus.

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Year:  1999        PMID: 10427018      PMCID: PMC91503     

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  25 in total

1.  Localization of the Mating Type Gene in Agaricus bisporus.

Authors:  J Xu; R W Kerrigan; P A Horgen; J B Anderson
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

Review 2.  Transposons in filamentous fungi--facts and perspectives.

Authors:  F Kempken; U Kück
Journal:  Bioessays       Date:  1998-08       Impact factor: 4.345

3.  Extensive, nonrandom diversity of excision footprints generated by Ds-like transposon Ascot-1 suggests new parallels with V(D)J recombination.

Authors:  V Colot; V Haedens; J L Rossignol
Journal:  Mol Cell Biol       Date:  1998-07       Impact factor: 4.272

Review 4.  Target site selection in transposition.

Authors:  N L Craig
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

Review 5.  Eukaryotic transposable elements and genome evolution.

Authors:  D J Finnegan
Journal:  Trends Genet       Date:  1989-04       Impact factor: 11.639

Review 6.  Transcription and reverse transcription of retrotransposons.

Authors:  J D Boeke; V G Corces
Journal:  Annu Rev Microbiol       Date:  1989       Impact factor: 15.500

7.  Inheritance of restriction fragment length polymorphisms in Agaricus brunnescens.

Authors:  R C Summerbell; A J Castle; P A Horgen; J B Anderson
Journal:  Genetics       Date:  1989-10       Impact factor: 4.562

8.  Identification of protein coding regions by database similarity search.

Authors:  W Gish; D J States
Journal:  Nat Genet       Date:  1993-03       Impact factor: 38.330

9.  The isolation of Ant1, a transposable element from Aspergillus niger.

Authors:  D C Glayzer; I N Roberts; D B Archer; R P Oliver
Journal:  Mol Gen Genet       Date:  1995-12-10

10.  Isolation of the transposable maize controlling elements Ac and Ds.

Authors:  N Fedoroff; S Wessler; M Shure
Journal:  Cell       Date:  1983-11       Impact factor: 41.582

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  3 in total

1.  Scooter, a new active transposon in Schizophyllum commune, has disrupted two genes regulating signal transduction.

Authors:  T J Fowler; M F Mitton
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

2.  Structure and transcriptional impact of divergent repetitive elements inserted within Phanerochaete chrysosporium strain RP-78 genes.

Authors:  Luis F Larrondo; Paulo Canessa; Rafael Vicuña; Philip Stewart; Amber Vanden Wymelenberg; Dan Cullen
Journal:  Mol Genet Genomics       Date:  2006-10-11       Impact factor: 3.291

3.  Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.

Authors:  Emmanuelle Morin; Annegret Kohler; Adam R Baker; Marie Foulongne-Oriol; Vincent Lombard; Laszlo G Nagy; Robin A Ohm; Aleksandrina Patyshakuliyeva; Annick Brun; Andrea L Aerts; Andrew M Bailey; Christophe Billette; Pedro M Coutinho; Greg Deakin; Harshavardhan Doddapaneni; Dimitrios Floudas; Jane Grimwood; Kristiina Hildén; Ursula Kües; Kurt M Labutti; Alla Lapidus; Erika A Lindquist; Susan M Lucas; Claude Murat; Robert W Riley; Asaf A Salamov; Jeremy Schmutz; Venkataramanan Subramanian; Han A B Wösten; Jianping Xu; Daniel C Eastwood; Gary D Foster; Anton S M Sonnenberg; Dan Cullen; Ronald P de Vries; Taina Lundell; David S Hibbett; Bernard Henrissat; Kerry S Burton; Richard W Kerrigan; Michael P Challen; Igor V Grigoriev; Francis Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

  3 in total

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