Literature DB >> 10426952

Detecting the DNA kinks in a DNA-CRP complex in solution with iodine-125 radioprobing.

V N Karamychev1, V B Zhurkin, S Garges, R D Neumann, I G Panyutin.   

Abstract

Auger-electron-emitting radioisotopes such as 125I produce DNA strand breaks within nanometer range of the decay site. Here we analyze these breaks in order to study changes in DNA conformation upon binding with cyclic AMP receptor protein (CRP) in solution. The clear difference we found in break frequency in the CRP-DNA complex, as compared to the naked DNA duplex, correlates with the increased distances between the deoxyriboses and the radioiodine atom caused by the CRP-induced kink observed in the cocrystal. Thus, we demonstrate that 125I radioprobing can be used to study fine conformational changes of DNA within DNA-protein complexes.

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Year:  1999        PMID: 10426952     DOI: 10.1038/11519

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  6 in total

1.  Intramolecular quadruplex conformation of human telomeric DNA assessed with 125I-radioprobing.

Authors:  Yujian He; Ronald D Neumann; Igor G Panyutin
Journal:  Nucleic Acids Res       Date:  2004-10-08       Impact factor: 16.971

2.  Radioprobing the conformation of DNA in a p53-DNA complex.

Authors:  Valeri N Karamychev; Difei Wang; Sharlyn J Mazur; Ettore Appella; Ronald D Neumann; Victor B Zhurkin; Igor G Panyutin
Journal:  Int J Radiat Biol       Date:  2012-06-21       Impact factor: 2.694

3.  Site-specific strand breaks in RNA produced by (125)I radiodecay.

Authors:  Elena K Gaidamakova; Ronald D Neumann; Igor G Panyutin
Journal:  Nucleic Acids Res       Date:  2002-11-15       Impact factor: 16.971

4.  Assessing DNA structures with 125I radioprobing.

Authors:  Timur I Gaynutdinov; Ronald D Neumann; Igor G Panyutin
Journal:  Methods Mol Biol       Date:  2010

5.  Simulation of (125)I decay in a synthetic oligodeoxynucleotide with normal and distorted geometry and the role of radiation and non-radiation actions.

Authors:  Wei Bo Li; Werner Friedland; Peter Jacob; Igor G Panyutin; Herwig G Paretzke
Journal:  Radiat Environ Biophys       Date:  2004-03-23       Impact factor: 1.925

6.  Structural polymorphism of intramolecular quadruplex of human telomeric DNA: effect of cations, quadruplex-binding drugs and flanking sequences.

Authors:  Timur I Gaynutdinov; Ronald D Neumann; Igor G Panyutin
Journal:  Nucleic Acids Res       Date:  2008-06-04       Impact factor: 16.971

  6 in total

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