Literature DB >> 10423461

The Kautsky curve is a built-in barcode.

E Tyystjärvi1, A Koski, M Keränen, O Nevalainen.   

Abstract

We identify objects from their visually observable morphological features. Automatic methods for identifying living objects are often needed in new technology, and these methods try to utilize shapes. When it comes to identifying plant species automatically, machine vision is difficult to implement because the shapes of different plants overlap and vary greatly because of different viewing angles in field conditions. In the present study we show that chlorophyll a fluorescence, emitted by plant leaves, carries information that can be used for the identification of plant species. Transient changes in fluorescence intensity when a light is turned on were parameterized and then subjected to a variety of pattern recognition procedures. A Self-Organizing Map constructed from the fluorescence signals was found to group the signals according to the phylogenetic origins of the plants. We then used three different methods of pattern recognition, of which the Bayesian Minimum Distance classifier is a parametric technique, whereas the Multilayer Perceptron neural network and k-Nearest Neighbor techniques are nonparametric. Of these techniques, the neural network turned out to be the most powerful one for identifying individual species or groups of species from their fluorescence transients. The excellent recognition accuracy, generally over 95%, allows us to speculate that the method can be further developed into an application in precision agriculture as a means of automatically identifying plant species in the field.

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Year:  1999        PMID: 10423461      PMCID: PMC1300407          DOI: 10.1016/S0006-3495(99)76967-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  3 in total

Review 1.  Photoinhibition of Photosystem II. Inactivation, protein damage and turnover.

Authors:  E M Aro; I Virgin; B Andersson
Journal:  Biochim Biophys Acta       Date:  1993-07-05

2.  Chlorophyll fluorescence assay for ozone injury in intact plants.

Authors:  U Schreiber
Journal:  Plant Physiol       Date:  1978-01       Impact factor: 8.340

3.  Cold acclimation of Pinus contorta and Pinus sylvestris assessed by chlorophyll fluorescence.

Authors:  K Lindgren; J E Hällgren
Journal:  Tree Physiol       Date:  1993-07       Impact factor: 4.196

  3 in total
  8 in total

1.  Case study of combinatorial imaging: what protocol and what chlorophyll fluorescence image to use when visualizing infection of Arabidopsis thaliana by Pseudomonas syringae?

Authors:  Karel Matous; Zuzana Benediktyová; Susanne Berger; Thomas Roitsch; Ladislav Nedbal
Journal:  Photosynth Res       Date:  2007-01-09       Impact factor: 3.573

2.  Towards discrimination of plant species by machine vision: advanced statistical analysis of chlorophyll fluorescence transients.

Authors:  Anamika Mishra; Karel Matous; Kumud B Mishra; Ladislav Nedbal
Journal:  J Fluoresc       Date:  2009-05-16       Impact factor: 2.217

Review 3.  Frequently asked questions about in vivo chlorophyll fluorescence: practical issues.

Authors:  Hazem M Kalaji; Gert Schansker; Richard J Ladle; Vasilij Goltsev; Karolina Bosa; Suleyman I Allakhverdiev; Marian Brestic; Filippo Bussotti; Angeles Calatayud; Piotr Dąbrowski; Nabil I Elsheery; Lorenzo Ferroni; Lucia Guidi; Sander W Hogewoning; Anjana Jajoo; Amarendra N Misra; Sergio G Nebauer; Simonetta Pancaldi; Consuelo Penella; DorothyBelle Poli; Martina Pollastrini; Zdzislawa B Romanowska-Duda; Beata Rutkowska; João Serôdio; Kancherla Suresh; Wiesław Szulc; Eduardo Tambussi; Marcos Yanniccari; Marek Zivcak
Journal:  Photosynth Res       Date:  2014-08-15       Impact factor: 3.573

4.  Mahalanobis distance screening of Arabidopsis mutants with chlorophyll fluorescence.

Authors:  Marius C Codrea; Marja Hakala-Yatkin; Anna Kårlund-Marttila; Ladislav Nedbal; Tero Aittokallio; Olli S Nevalainen; Esa Tyystjärvi
Journal:  Photosynth Res       Date:  2010-08-21       Impact factor: 3.573

Review 5.  Frequently asked questions about chlorophyll fluorescence, the sequel.

Authors:  Hazem M Kalaji; Gert Schansker; Marian Brestic; Filippo Bussotti; Angeles Calatayud; Lorenzo Ferroni; Vasilij Goltsev; Lucia Guidi; Anjana Jajoo; Pengmin Li; Pasquale Losciale; Vinod K Mishra; Amarendra N Misra; Sergio G Nebauer; Simonetta Pancaldi; Consuelo Penella; Martina Pollastrini; Kancherla Suresh; Eduardo Tambussi; Marcos Yanniccari; Marek Zivcak; Magdalena D Cetner; Izabela A Samborska; Alexandrina Stirbet; Katarina Olsovska; Kristyna Kunderlikova; Henry Shelonzek; Szymon Rusinowski; Wojciech Bąba
Journal:  Photosynth Res       Date:  2016-11-04       Impact factor: 3.573

6.  Chlorophyll fluorescence as a tool for nutrient status identification in rapeseed plants.

Authors:  Hazem M Kalaji; Wojciech Bąba; Krzysztof Gediga; Vasilij Goltsev; Izabela A Samborska; Magdalena D Cetner; Stella Dimitrova; Urszula Piszcz; Krzysztof Bielecki; Kamila Karmowska; Kolyo Dankov; Agnieszka Kompała-Bąba
Journal:  Photosynth Res       Date:  2017-11-28       Impact factor: 3.573

7.  Eco-Physiological Screening of Different Tomato Genotypes in Response to High Temperatures: A Combined Field-to-Laboratory Approach.

Authors:  Carmen Arena; Stefano Conti; Silvana Francesca; Giuseppe Melchionna; Josef Hájek; Miloš Barták; Amalia Barone; Maria Manuela Rigano
Journal:  Plants (Basel)       Date:  2020-04-15

8.  Using Rapid Chlorophyll Fluorescence Transients to Classify Vitis Genotypes.

Authors:  Jorge Marques da Silva; Andreia Figueiredo; Jorge Cunha; José Eduardo Eiras-Dias; Sara Silva; Leonardo Vanneschi; Pedro Mariano
Journal:  Plants (Basel)       Date:  2020-02-01
  8 in total

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