Literature DB >> 10383477

BLAST PRINTS--alternative perspectives on sequence similarity.

W Wright1, P Scordis, T K Attwood.   

Abstract

SUMMARY: An implementation of BLAST for searching the PRINTS database is presented. The interface allows submission of either protein or DNA queries, and returns the familiar form of output, but modified by means of direct links both to the familial discriminators in PRINTS and to fingerprint profile visualization software. The server thus couples the rapidity of BLAST searching with the sensitivity of fingerprint diagnoses, providing alternative perspectives on a given query. AVAILABILITY: http://www.biochem.ucl. ac.uk/cgi-bin/wright/printsBLAST.cgi

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Year:  1999        PMID： 10383477     DOI： 10.1093/bioinformatics/15.6.523

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  PRINTS-S: the database formerly known as PRINTS.

Authors:  T K Attwood; M D Croning; D R Flower; A P Lewis; J E Mabey; P Scordis; J N Selley; W Wright
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  PRINTS and PRINTS-S shed light on protein ancestry.

Authors:  T K Attwood; M J Blythe; D R Flower; A Gaulton; J E Mabey; N Maudling; L McGregor; A L Mitchell; G Moulton; K Paine; P Scordis
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  PRINTS and its automatic supplement, prePRINTS.

Authors:  T K Attwood; P Bradley; D R Flower; A Gaulton; N Maudling; A L Mitchell; G Moulton; A Nordle; K Paine; P Taylor; A Uddin; C Zygouri
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Serotonin, via HTR2 receptors, excites neurons in a cortical-like premotor nucleus necessary for song learning and production.

Authors:  William E Wood; Peter V Lovell; Claudio V Mello; David J Perkel
Journal:  J Neurosci       Date:  2011-09-28       Impact factor: 6.167

5.  The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012.

Authors:  Teresa K Attwood; Alain Coletta; Gareth Muirhead; Athanasia Pavlopoulou; Peter B Philippou; Ivan Popov; Carlos Romá-Mateo; Athina Theodosiou; Alex L Mitchell
Journal:  Database (Oxford)       Date:  2012-04-15       Impact factor: 3.451

6.  Homology induction: the use of machine learning to improve sequence similarity searches.

Authors:  Andreas Karwath; Ross D King
Journal:  BMC Bioinformatics       Date:  2002-04-23       Impact factor: 3.169
  6 in total

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