Literature DB >> 10371036

Dynamics of translation on the ribosome: molecular mechanics of translocation.

M V Rodnina1, A Savelsbergh, W Wintermeyer.   

Abstract

The translocation step of protein elongation entails a large-scale rearrangement of the tRNA-mRNA-ribosome complex. Recent years have seen major advances in unraveling the mechanism of the process on the molecular level. A number of intermediate states have been defined and, in part, characterized structurally. The article reviews the recent evidence that suggests a dynamic role of the ribosome and its ligands during translocation. The focus is on dynamic aspects of tRNA movement and on the role of elongation factor G and GTP hydrolysis in translocation catalysis. The significance of structural changes of the ribosome induced by elongation factor G as well the role of ribosomal RNA are addressed. A functional model of elongation factor G as a motor protein driven by GTP hydrolysis is discussed.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10371036     DOI: 10.1111/j.1574-6976.1999.tb00402.x

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  17 in total

1.  Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution.

Authors:  M G Gomez-Lorenzo; C M Spahn; R K Agrawal; R A Grassucci; P Penczek; K Chakraburtty; J P Ballesta; J L Lavandera; J F Garcia-Bustos; J Frank
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

2.  Excited states of ribosome translocation revealed through integrative molecular modeling.

Authors:  Paul C Whitford; Aqeel Ahmed; Yanan Yu; Scott P Hennelly; Florence Tama; Christian M T Spahn; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-11       Impact factor: 11.205

3.  Conformational changes in switch I of EF-G drive its directional cycling on and off the ribosome.

Authors:  Cristina Ticu; Roxana Nechifor; Boray Nguyen; Melanie Desrosiers; Kevin S Wilson
Journal:  EMBO J       Date:  2009-06-18       Impact factor: 11.598

4.  Elongation factor Ts directly facilitates the formation and disassembly of the Escherichia coli elongation factor Tu·GTP·aminoacyl-tRNA ternary complex.

Authors:  Benjamin J Burnett; Roger B Altman; Ryan Ferrao; Jose L Alejo; Navdep Kaur; Joshua Kanji; Scott C Blanchard
Journal:  J Biol Chem       Date:  2013-03-28       Impact factor: 5.157

5.  Herpes simplex virus type 1 2-kilobase latency-associated transcript intron associates with ribosomal proteins and splicing factors.

Authors:  M Ahmed; N W Fraser
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

6.  Molecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational Change.

Authors:  Keith P Van Nostrand; Scott D Kennedy; Douglas H Turner; David H Mathews
Journal:  J Chem Theory Comput       Date:  2011-11-08       Impact factor: 6.006

7.  Oxazolidinone antibiotics target the P site on Escherichia coli ribosomes.

Authors:  Hiroyuki Aoki; Lizhu Ke; Susan M Poppe; Toni J Poel; Elizabeth A Weaver; Robert C Gadwood; Richard C Thomas; Dean L Shinabarger; M Clelia Ganoza
Journal:  Antimicrob Agents Chemother       Date:  2002-04       Impact factor: 5.191

8.  Direct evidence of an elongation factor-Tu/Ts·GTP·Aminoacyl-tRNA quaternary complex.

Authors:  Benjamin J Burnett; Roger B Altman; Angelica Ferguson; Michael R Wasserman; Zhou Zhou; Scott C Blanchard
Journal:  J Biol Chem       Date:  2014-07-02       Impact factor: 5.157

9.  MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory.

Authors:  Alex Tek; Andrei A Korostelev; Samuel Coulbourn Flores
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

10.  Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.

Authors:  Jayati Sengupta; Jakob Nilsson; Richard Gursky; Morten Kjeldgaard; Poul Nissen; Joachim Frank
Journal:  J Mol Biol       Date:  2008-07-11       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.