Literature DB >> 10361097

Advances in structural genomics.

S A Teichmann1, C Chothia, M Gerstein.   

Abstract

New computational techniques have allowed protein folds to be assigned to all or parts of between a quarter (Caenorhabditis elegans) and a half (Mycoplasma genitalium) of the individual protein sequences in different genomes. These assignments give a new perspective on domain structures, gene duplications, protein families and protein folds in genome sequences.

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Year:  1999        PMID: 10361097     DOI: 10.1016/S0959-440X(99)80053-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  40 in total

1.  The ASTRAL compendium for protein structure and sequence analysis.

Authors:  S E Brenner; P Koehl; M Levitt
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments.

Authors:  I Friedberg; T Kaplan; H Margalit
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

3.  PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Authors:  J Qian; B Stenger; C A Wilson; J Lin; R Jansen; S A Teichmann; J Park; W G Krebs; H Yu; V Alexandrov; N Echols; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

4.  Identification of related proteins with weak sequence identity using secondary structure information.

Authors:  C Geourjon; C Combet; C Blanchet; G Deléage
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

Review 5.  Structural biology.

Authors:  K C Holmes
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-12-29       Impact factor: 6.237

6.  GTOP: a database of protein structures predicted from genome sequences.

Authors:  Takeshi Kawabata; Satoshi Fukuchi; Keiichi Homma; Motonori Ota; Jiro Araki; Takehiko Ito; Nobuyuki Ichiyoshi; Ken Nishikawa
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.

Authors:  Daniel W A Buchan; Adrian J Shepherd; David Lee; Frances M G Pearl; Stuart C G Rison; Janet M Thornton; Christine A Orengo
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

8.  A global representation of the protein fold space.

Authors:  Jingtong Hou; Gregory E Sims; Chao Zhang; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-26       Impact factor: 11.205

9.  Expanding protein universe and its origin from the biological Big Bang.

Authors:  Nikolay V Dokholyan; Boris Shakhnovich; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-16       Impact factor: 11.205

10.  Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome.

Authors:  S Balasubramanian; T Schneider; M Gerstein; L Regan
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

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