Literature DB >> 10361095

Deoxyribozymes: new players in the ancient game of biocatalysis.

Y Li1, R R Breaker.   

Abstract

The repetitive and extraordinarily stable polynucleotide chains of DNA serve as an ideal storage system for genetic information. Although it is best known for its helical structure and relatively inert character, in vitro selection can be used to compel DNA to perform a surprising variety of chemical reactions. These artificial DNA enzymes or 'deoxyribozymes' generate large chemical rate enhancements and demonstrate precise substrate recognition, much like their protein and RNA counterparts. Recent studies with these prototypic deoxyribozymes indicate that DNA has a substantial untapped potential for intricate structure formation that could be exploited in novel chemical and biological catalysis.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10361095     DOI: 10.1016/S0959-440X(99)80042-6

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  33 in total

Review 1.  Recent advances in the elucidation of the mechanisms of action of ribozymes.

Authors:  Y Takagi; M Warashina; W J Stec; K Yoshinari; K Taira
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  Cooperative binding of effectors by an allosteric ribozyme.

Authors:  A M Jose; G A Soukup; R R Breaker
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

3.  A DNA enzyme with N-glycosylase activity.

Authors:  T L Sheppard; P Ordoukhanian; G F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

4.  Phosphorylation at 5' end of guanosine stretches inhibits dimerization of G-quadruplexes and formation of a G-quadruplex interferes with the enzymatic activities of DNA enzymes.

Authors:  M Khabir Uddin; Yoshio Kato; Yasuomi Takagi; Toshiyasu Mikuma; Kazunari Taira
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

5.  Selection of genomic sequences that bind tightly to Ff gene 5 protein: primer-free genomic SELEX.

Authors:  Jin-Der Wen; Donald M Gray
Journal:  Nucleic Acids Res       Date:  2004-12-15       Impact factor: 16.971

6.  Novel approach to quantitative detection of specific rRNA in a microbial community, using catalytic DNA.

Authors:  Hikaru Suenaga; Rui Liu; Yuko Shiramasa; Takahiro Kanagawa
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

7.  A unified sensor architecture for isothermal detection of double-stranded DNA, oligonucleotides, and small molecules.

Authors:  Carl W Brown; Matthew R Lakin; Aurora Fabry-Wood; Eli K Horwitz; Nicholas A Baker; Darko Stefanovic; Steven W Graves
Journal:  Chembiochem       Date:  2015-02-06       Impact factor: 3.164

8.  Dissecting metal ion-dependent folding and catalysis of a single DNAzyme.

Authors:  Hee-Kyung Kim; Ivan Rasnik; Juewen Liu; Taekjip Ha; Yi Lu
Journal:  Nat Chem Biol       Date:  2007-10-28       Impact factor: 15.040

Review 9.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

10.  Design of a biochemical circuit motif for learning linear functions.

Authors:  Matthew R Lakin; Amanda Minnich; Terran Lane; Darko Stefanovic
Journal:  J R Soc Interface       Date:  2014-12-06       Impact factor: 4.118

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.