Literature DB >> 10361094

From protein structure to function.

C A Orengo1, A E Todd, J M Thornton.   

Abstract

Several databases of protein structural families now exist-organised according to both evolutionary relationships and common folding arrangements. Although these lag behind sequence databases in size, the prospect of structural genomics initiatives means that they may soon include representatives of many of the sequence families. To some extent, functional information can be derived from structural similarity. For some structural families, their function is highly conserved, whereas, for others, it can only be inherited or derived on the basis of additional information (e.g. sequence patterns, common residue clusters and characteristic surface properties).

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Year:  1999        PMID: 10361094     DOI: 10.1016/S0959-440X(99)80051-7

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  51 in total

1.  Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics.

Authors:  Y Kuroda; K Tani; Y Matsuo; S Yokoyama
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

2.  Comparing function and structure between entire proteomes.

Authors:  J Liu; B Rost
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

3.  Expanding protein universe and its origin from the biological Big Bang.

Authors:  Nikolay V Dokholyan; Boris Shakhnovich; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-16       Impact factor: 11.205

4.  Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function.

Authors:  Cosmin Saveanu; Simona Miron; Tudor Borza; Constantin T Craescu; Gilles Labesse; Cristina Gagyi; Aurel Popescu; Francis Schaeffer; Abdelkader Namane; Christine Laurent-Winter; Octavian Bârzu; Anne-Marie Gilles
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

5.  FoldMiner: structural motif discovery using an improved superposition algorithm.

Authors:  Jessica Shapiro; Douglas Brutlag
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

Review 6.  Target selection and determination of function in structural genomics.

Authors:  James D Watson; Annabel E Todd; James Bray; Roman A Laskowski; Aled Edwards; Andrzej Joachimiak; Christine A Orengo; Janet M Thornton
Journal:  IUBMB Life       Date:  2003 Apr-May       Impact factor: 3.885

7.  Prediction of the plant beta-barrel proteome: a case study of the chloroplast outer envelope.

Authors:  Enrico Schleiff; Lutz Andreas Eichacker; Kerstin Eckart; Thomas Becker; Oliver Mirus; Tanja Stahl; Jürgen Soll
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

8.  FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web.

Authors:  Jessica Shapiro; Douglas Brutlag
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

9.  A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.

Authors:  Ozlem Keskin; Chung-Jung Tsai; Haim Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

10.  Automated prediction of protein function and detection of functional sites from structure.

Authors:  Florencio Pazos; Michael J E Sternberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-29       Impact factor: 11.205

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