Literature DB >> 10361090

Exposing the kinetic traps in RNA folding.

D K Treiber1, J R Williamson.   

Abstract

Large ribozymes fold on a 'glacial' timescale compared to the folding of their protein counterparts. The sluggish folding exhibited by large RNAs results from the formation of kinetically trapped, misfolded intermediates, which are nonessential features of the folding mechanism. Newly developed mutant ribozymes that avoid kinetic traps should facilitate the study of the RNA folding problem.

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Year:  1999        PMID: 10361090     DOI: 10.1016/S0959-440X(99)80045-1

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  94 in total

Review 1.  Maximizing RNA folding rates: a balancing act.

Authors:  D Thirumalai; S A Woodson
Journal:  RNA       Date:  2000-06       Impact factor: 4.942

2.  Native topology determines force-induced unfolding pathways in globular proteins.

Authors:  D K Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

3.  Exploring the folding landscape of a structured RNA.

Authors:  Rick Russell; Xiaowei Zhuang; Hazen P Babcock; Ian S Millett; Sebastian Doniach; Steven Chu; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-26       Impact factor: 11.205

4.  RNA hairpin-folding kinetics.

Authors:  Wenbing Zhang; Shi-Jie Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

5.  Formation of a GNRA tetraloop in P5abc can disrupt an interdomain interaction in the Tetrahymena group I ribozyme.

Authors:  M Zheng; M Wu; I Tinoco
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

6.  Monitoring intermediate folding states of the td group I intron in vivo.

Authors:  Christina Waldsich; Benoît Masquida; Eric Westhof; Renée Schroeder
Journal:  EMBO J       Date:  2002-10-01       Impact factor: 11.598

7.  RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo.

Authors:  Christina Waldsich; Rupert Grossberger; Renée Schroeder
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

8.  Freely diffusing single hairpin ribozymes provide insights into the role of secondary structure and partially folded states in RNA folding.

Authors:  Goran Pljevaljcić; David P Millar; Ashok A Deniz
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

9.  Probing complex RNA structures by mechanical force.

Authors:  S Harlepp; T Marchal; J Robert; J-F Léger; A Xayaphoummine; H Isambert; D Chatenay
Journal:  Eur Phys J E Soft Matter       Date:  2003-12       Impact factor: 1.890

10.  Kinetics of tRNA folding monitored by aminoacylation.

Authors:  Hari Bhaskaran; Annia Rodriguez-Hernandez; John J Perona
Journal:  RNA       Date:  2012-01-27       Impact factor: 4.942

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