Literature DB >> 10353827

The midpoint potentials for the oxidized-semiquinone couple for Gly57 mutants of the Clostridium beijerinckii flavodoxin correlate with changes in the hydrogen-bonding interaction with the proton on N(5) of the reduced flavin mononucleotide cofactor as measured by NMR chemical shift temperature dependencies.

F C Chang1, R P Swenson.   

Abstract

In the Clostridium beijerinckii flavodoxin, the reduction of the flavin mononucleotide (FMN) cofactor is accompanied by a local conformation change in which the Gly57-Asp58 peptide bond "flips" from primarily the unusual cis O-down conformation in the oxidized state to the trans O-up conformation such that a new hydrogen bond can be formed between the carbonyl group of Gly57 and the proton on N(5) of the neutral FMN semiquinone radical [Ludwig, M. L., Pattridge, K. A., Metzger, A. L., Dixon, M. M., Eren, M., Feng, Y., and Swenson, R. P. (1997) Biochemistry 36, 1259-1280]. This interaction is thought to contribute to the relative stabilization of the flavin semiquinone and may be at least partially responsible for the substantial separation of the midpoint potentials of the two one-electron reduction steps. Through a series of amino acid substitutions, the above cited study demonstrated the critical role of the often conserved glycine residue in this process. However, it has not been directly established experimentally as to whether these substitutions brought about the changes in the midpoint potentials by altering the strength of this hydrogen-bonding interaction as proposed. In this study, the relative strengths of the FMN N(5)H.O57 hydrogen bond in wild type and the G57A, G57N, and G57T mutants were evaluated by measuring the temperature dependency of the chemical shift for the proton on N(5) of the fully reduced cofactor by 1H-15N HSQC nuclear magnetic resonance spectroscopy. Based on the established correlation between the temperature coefficient of amide protons and the strength of hydrogen bonding in small peptides, the apparent strength of the N(5)H.O57 interaction was found to depend on the properties of the side chain at position 57. The glycine residue found in the wild-type flavodoxin appears to provide the strongest interaction while the beta-branched side chain in the G57T mutant provides the weakest. A good correlation was noted between the temperature coefficients of N(5)H and the one-electron reduction potential for the ox/sq couple as well as the binding free energy of the FMN semiquinone in this group of mutants. These results provide more direct quantitative evidence that support the previous hypothesis that this conformation change and the associated formation of the hydrogen bonding interaction with N(5)H of the reduced FMN represent an important means of stabilizing the neutral semiquinone and in modulating the oxidation-reduction potentials of the flavin cofactor in this and perhaps other flavodoxins.

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Year:  1999        PMID: 10353827     DOI: 10.1021/bi982203u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Effects of environment on flavin reactivity in morphinone reductase: analysis of enzymes displaying differential charge near the N-1 atom and C-2 carbonyl region of the active-site flavin.

Authors:  D H Craig; T Barna; P C Moody; N C Bruce; S K Chapman; A W Munro; N S Scrutton
Journal:  Biochem J       Date:  2001-10-15       Impact factor: 3.857

2.  Characterization of a bifunctional PutA homologue from Bradyrhizobium japonicum and identification of an active site residue that modulates proline reduction of the flavin adenine dinucleotide cofactor.

Authors:  Navasona Krishnan; Donald F Becker
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

3.  1H dynamic nuclear polarization based on an endogenous radical.

Authors:  Thorsten Maly; Dongtao Cui; Robert G Griffin; Anne-Frances Miller
Journal:  J Phys Chem B       Date:  2012-06-07       Impact factor: 2.991

4.  Structural and Kinetic Studies of Asp632 Mutants and Fully Reduced NADPH-Cytochrome P450 Oxidoreductase Define the Role of Asp632 Loop Dynamics in the Control of NADPH Binding and Hydride Transfer.

Authors:  Chuanwu Xia; Freeborn Rwere; Sangchoul Im; Anna L Shen; Lucy Waskell; Jung-Ja P Kim
Journal:  Biochemistry       Date:  2018-01-30       Impact factor: 3.162

5.  A crystallographic study of Cys69Ala flavodoxin II from Azotobacter vinelandii: structural determinants of redox potential.

Authors:  Sharmini Alagaratnam; Gertie van Pouderoyen; Tjaard Pijning; Bauke W Dijkstra; Davide Cavazzini; Gian Luigi Rossi; Walter M A M Van Dongen; Carlo P M van Mierlo; Willem J H van Berkel; Gerard W Canters
Journal:  Protein Sci       Date:  2005-09       Impact factor: 6.725

6.  Unusual spectroscopic and ligand binding properties of the cytochrome P450-flavodoxin fusion enzyme XplA.

Authors:  Soi H Bui; Kirsty J McLean; Myles R Cheesman; Justin M Bradley; Stephen E J Rigby; Colin W Levy; David Leys; Andrew W Munro
Journal:  J Biol Chem       Date:  2012-04-12       Impact factor: 5.157

7.  Structure and function of an unusual flavodoxin from the domain Archaea.

Authors:  Divya Prakash; Prashanti R Iyer; Suharti Suharti; Karim A Walters; Michel Geovanni Santiago-Martinez; John H Golbeck; Katsuhiko S Murakami; James G Ferry
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-04       Impact factor: 11.205

Review 8.  The type II isopentenyl Diphosphate:Dimethylallyl diphosphate isomerase (IDI-2): A model for acid/base chemistry in flavoenzyme catalysis.

Authors:  Christopher J Thibodeaux; Hung-Wen Liu
Journal:  Arch Biochem Biophys       Date:  2017-05-31       Impact factor: 4.013

9.  Mutants of Cytochrome P450 Reductase Lacking Either Gly-141 or Gly-143 Destabilize Its FMN Semiquinone.

Authors:  Freeborn Rwere; Chuanwu Xia; Sangchoul Im; Mohammad M Haque; Dennis J Stuehr; Lucy Waskell; Jung-Ja P Kim
Journal:  J Biol Chem       Date:  2016-05-09       Impact factor: 5.157

10.  Functional characterization of the re-face loop spanning residues 536-541 and its interactions with the cofactor in the flavin mononucleotide-binding domain of flavocytochrome P450 from Bacillus megaterium.

Authors:  Mumtaz Kasim; Huai-Chun Chen; Richard P Swenson
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

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