Literature DB >> 10333745

Protein-RNA recognition.

R N De Guzman1, R B Turner, M F Summers.   

Abstract

The x-ray structure of the glutamine aminoacyl tRNA synthetase bound to its cognate tRNA(Gln) and ATP was reported by Steitz and co-workers in 1989, providing the first high resolution structure of a protein-RNA complex. Since then, high resolution structures have been reported for RNA complexes with five other tRNA synthetases, the elongation factor Tu, the bacteriophage MS2 coat protein, the human spliceosomal U1A and U2B"-U1A' proteins, and the HIV-1 nucleocapsid protein. Although the number of high resolution structures of protein-RNA complexes are rather small, some general themes have begun to emerge regarding the nature and mechanisms of protein-RNA recognition.

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Year:  1998        PMID: 10333745     DOI: 10.1002/(SICI)1097-0282(1998)48:2<181::AID-BIP7>3.0.CO;2-L

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  27 in total

1.  Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation.

Authors:  C Burkhardt; M Zacharias
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

2.  Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.

Authors:  Blair R Szymczyna; John Bowman; Susan McCracken; Antonio Pineda-Lucena; Ying Lu; Brian Cox; Mark Lambermon; Brenton R Graveley; Cheryl H Arrowsmith; Benjamin J Blencowe
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

3.  Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer.

Authors:  J Colin Cox; Andrew Hayhurst; Jay Hesselberth; Travis S Bayer; George Georgiou; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

Review 4.  The mysterious RAMP proteins and their roles in small RNA-based immunity.

Authors:  Ruiying Wang; Hong Li
Journal:  Protein Sci       Date:  2012-04       Impact factor: 6.725

5.  Protein-RNA interactions: a structural analysis.

Authors:  S Jones; D T Daley; N M Luscombe; H M Berman; J M Thornton
Journal:  Nucleic Acids Res       Date:  2001-02-15       Impact factor: 16.971

6.  Real-time RNA profiling within a single bacterium.

Authors:  Thuc T Le; Sébastien Harlepp; Calin C Guet; Kimberly Dittmar; Thierry Emonet; Tao Pan; Philippe Cluzel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-20       Impact factor: 11.205

7.  Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1.

Authors:  Nathan A Hagan; Daniele Fabris
Journal:  J Mol Biol       Date:  2006-10-03       Impact factor: 5.469

Review 8.  Nucleocapsid protein function in early infection processes.

Authors:  James A Thomas; Robert J Gorelick
Journal:  Virus Res       Date:  2008-02-14       Impact factor: 3.303

9.  Functional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion.

Authors:  Catharina Netter; Gert Weber; Heike Benecke; Markus C Wahl
Journal:  RNA       Date:  2009-05-15       Impact factor: 4.942

10.  A game of tag: MAPS catches up on RNA interactomes.

Authors:  Marie-Claude Carrier; David Lalaouna; Eric Massé
Journal:  RNA Biol       Date:  2016-03-11       Impact factor: 4.652

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