Literature DB >> 10333564

The euryarchaeotes, a subdomain of Archaea, survive on a single DNA polymerase: fact or farce?

Y Ishino1, I K Cann.   

Abstract

Archaea is now recognized as the third domain of life. Since their discovery, much effort has been directed towards understanding the molecular biology and biochemistry of Archaea. The objective is to comprehend the complete structure and the depth of the phylogenetic tree of life. DNA replication is one of the most important events in living organisms and DNA polymerase is the key enzyme in the molecular machinery which drives the process. All archaeal DNA polymerases were thought to belong to family B. This was because all of the products of pol genes that had been cloned showed amino acid sequence similarities to those of this family, which includes three eukaryal DNA replicases and Escherichia coli DNA polymerase II. Recently, we found a new heterodimeric DNA polymerase from the hyperthermophilic archaeon, Pyrococcus furiosus. The genes coding for the subunits of this DNA polymerase are conserved in the euryarchaeotes whose genomes have been completely sequenced. The biochemical characteristics of the novel DNA polymerase family suggest that its members play an important role in DNA replication within euryarchaeal cells. We review here our current knowledge on DNA polymerases in Archaea with emphasis on the novel DNA polymerase discovered in Euryarchaeota.

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Year:  1998        PMID: 10333564     DOI: 10.1266/ggs.73.323

Source DB:  PubMed          Journal:  Genes Genet Syst        ISSN: 1341-7568            Impact factor:   1.517


  12 in total

1.  Thermostable DNA polymerase from the archaeon Archaeoglobus fulgidus.

Authors:  S E Chalov; O L Voronina; O V Sergienko; V G Lunin
Journal:  Dokl Biochem Biophys       Date:  2002 Jan-Feb       Impact factor: 0.788

2.  Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  I K Cann; S Ishino; M Yuasa; H Daiyasu; H Toh; Y Ishino
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

3.  Mutational analysis of Pyrococcus furiosus replication factor C based on the three-dimensional structure.

Authors:  Sonoko Ishino; Takuji Oyama; Mihoko Yuasa; Kosuke Morikawa; Yoshizumi Ishino
Journal:  Extremophiles       Date:  2003-02-04       Impact factor: 2.395

4.  Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA.

Authors:  Shigeki Matsumiya; Sonoko Ishino; Yoshizumi Ishino; Kosuke Morikawa
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

5.  Characterization of the 3' exonuclease subunit DP1 of Methanococcus jannaschii replicative DNA polymerase D.

Authors:  Maarit Jokela; Anitta Eskelinen; Helmut Pospiech; Juha Rouvinen; Juhani E Syväoja
Journal:  Nucleic Acids Res       Date:  2004-04-30       Impact factor: 16.971

6.  Functional interactions of a homolog of proliferating cell nuclear antigen with DNA polymerases in Archaea.

Authors:  I K Cann; S Ishino; I Hayashi; K Komori; H Toh; K Morikawa; Y Ishino
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

7.  Three proliferating cell nuclear antigen-like proteins found in the hyperthermophilic archaeon Aeropyrum pernix: interactions with the two DNA polymerases.

Authors:  Katsuya Daimon; Yutaka Kawarabayasi; Hisashi Kikuchi; Yoshihiko Sako; Yoshizumi Ishino
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

8.  Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus.

Authors:  S Matsumiya; Y Ishino; K Morikawa
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

9.  DNA polymerases BI and D from the hyperthermophilic archaeon Pyrococcus furiosus both bind to proliferating cell nuclear antigen with their C-terminal PIP-box motifs.

Authors:  Kazuo Tori; Megumi Kimizu; Sonoko Ishino; Yoshizumi Ishino
Journal:  J Bacteriol       Date:  2007-05-11       Impact factor: 3.490

10.  Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.

Authors:  E L Hendrickson; R Kaul; Y Zhou; D Bovee; P Chapman; J Chung; E Conway de Macario; J A Dodsworth; W Gillett; D E Graham; M Hackett; A K Haydock; A Kang; M L Land; R Levy; T J Lie; T A Major; B C Moore; I Porat; A Palmeiri; G Rouse; C Saenphimmachak; D Söll; S Van Dien; T Wang; W B Whitman; Q Xia; Y Zhang; F W Larimer; M V Olson; J A Leigh
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

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