Literature DB >> 10331940

Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library.

R Li1, E Mignot, J Faraco, H Kadotani, J Cantanese, B Zhao, X Lin, L Hinton, E A Ostrander, D F Patterson, P J de Jong.   

Abstract

A large insert canine genomic bacterial artificial chromosome (BAC) library was built from a Doberman pinscher. Approximately 166,000 clones were gridded on nine high-density hybridization filters. Insert analysis of randomly selected clones indicated a mean insert size of 155 kb and predicted 8.1 coverage of the canine genome. Two percent of the clones were nonrecombinant. Chromosomal fluorescence in situ hybridization studies of 60 BAC clones indicated no chimerism. The library was hybridized with dog PCR products representing eight genes (ADA, TNFA, GCA, MYB, HOXA, GUSB, THY1, and TOP1). The resulting positive clones were characterized and shown to be compatible with an eightfold redundant library. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10331940     DOI: 10.1006/geno.1999.5772

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  23 in total

1.  Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci.

Authors:  Michael A Chapman; Ian J Donaldson; James Gilbert; Darren Grafham; Jane Rogers; Anthony R Green; Berthold Göttgens
Journal:  Genome Res       Date:  2004-01-12       Impact factor: 9.043

Review 2.  Genetic and phenotypic variations of inherited retinal diseases in dogs: the power of within- and across-breed studies.

Authors:  Keiko Miyadera; Gregory M Acland; Gustavo D Aguirre
Journal:  Mamm Genome       Date:  2011-11-08       Impact factor: 2.957

3.  Identical mutation in a novel retinal gene causes progressive rod-cone degeneration in dogs and retinitis pigmentosa in humans.

Authors:  Barbara Zangerl; Orly Goldstein; Alisdair R Philp; Sarah J P Lindauer; Susan E Pearce-Kelling; Robert F Mullins; Alexander S Graphodatsky; Daniel Ripoll; Jeanette S Felix; Edwin M Stone; Gregory M Acland; Gustavo D Aguirre
Journal:  Genomics       Date:  2006-08-30       Impact factor: 5.736

Review 4.  Challenges in the development of therapeutics for narcolepsy.

Authors:  Sarah Wurts Black; Akihiro Yamanaka; Thomas S Kilduff
Journal:  Prog Neurobiol       Date:  2015-12-23       Impact factor: 11.685

5.  Construction of a 2-Mb resolution BAC microarray for CGH analysis of canine tumors.

Authors:  Rachael Thomas; Allyson Scott; Cordelia F Langford; Susan P Fosmire; Cristan M Jubala; Travis D Lorentzen; Christophe Hitte; Elinor K Karlsson; Ewen Kirkness; Elaine A Ostrander; Francis Galibert; Kerstin Lindblad-Toh; Jaime F Modiano; Matthew Breen
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

6.  Parallel construction of orthologous sequence-ready clone contig maps in multiple species.

Authors:  James W Thomas; Arjun B Prasad; Tyrone J Summers; Shih-Queen Lee-Lin; Valerie V B Maduro; Jacquelyn R Idol; Joseph F Ryan; Pamela J Thomas; Jennifer C McDowell; Eric D Green
Journal:  Genome Res       Date:  2002-08       Impact factor: 9.043

7.  The cnm locus, a canine homologue of human autosomal forms of centronuclear myopathy, maps to chromosome 2.

Authors:  Laurent Tiret; Stéphane Blot; Jean-Louis Kessler; Hugues Gaillot; Matthew Breen; Jean-Jacques Panthier
Journal:  Hum Genet       Date:  2003-07-23       Impact factor: 4.132

8.  Canine polydactyl mutations with heterogeneous origin in the conserved intronic sequence of LMBR1.

Authors:  Kiyun Park; Joohyun Kang; Krishna Pd Subedi; Ji-Hong Ha; Chankyu Park
Journal:  Genetics       Date:  2008-08-09       Impact factor: 4.562

9.  Breed relationships facilitate fine-mapping studies: a 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds.

Authors:  Heidi G Parker; Anna V Kukekova; Dayna T Akey; Orly Goldstein; Ewen F Kirkness; Kathleen C Baysac; Dana S Mosher; Gustavo D Aguirre; Gregory M Acland; Elaine A Ostrander
Journal:  Genome Res       Date:  2007-10-04       Impact factor: 9.043

10.  Disruption of chromosome 11 in canine fibrosarcomas highlights an unusual variability of CDKN2B in dogs.

Authors:  Jesús Aguirre-Hernández; Bruce S Milne; Chris Queen; Patricia C M O'Brien; Tess Hoather; Sean Haugland; Malcolm A Ferguson-Smith; Jane M Dobson; David R Sargan
Journal:  BMC Vet Res       Date:  2009-07-31       Impact factor: 2.741

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