Literature DB >> 10322219

Predicting structures for genome proteins.

D Fischer1, D Eisenberg.   

Abstract

Assigning three-dimensional protein folds to genome sequences is essential to understanding protein function. Although experimental three-dimensional structures are currently available for only a very small fraction of these sequences, computational fold assignment is able to assign folds to 20-30% of the sequences in various genomes. This percentage varies depending on the particular organism under analysis, on the sensitivities of the methods used and on the number of experimental structures available at the time the assignment is carried out. The fraction of assignable sequences is currently increasing at an annual rate of roughly 18%. If this rate is sustained throughout the coming years, three-dimensional computational models for more than half of the genome sequences may be available by the year 2003.

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Year:  1999        PMID: 10322219     DOI: 10.1016/S0959-440X(99)80029-3

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  7 in total

1.  DipoCoup: A versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts.

Authors:  J Meiler; W Peti; C Griesinger
Journal:  J Biomol NMR       Date:  2000-08       Impact factor: 2.835

2.  All are not equal: a benchmark of different homology modeling programs.

Authors:  Björn Wallner; Arne Elofsson
Journal:  Protein Sci       Date:  2005-05       Impact factor: 6.725

3.  Molecular dynamics simulations of the human CAR ligand-binding domain: deciphering the molecular basis for constitutive activity.

Authors:  Björn Windshügel; Johanna Jyrkkärinne; Antti Poso; Paavo Honkakoski; Wolfgang Sippl
Journal:  J Mol Model       Date:  2004-12-23       Impact factor: 1.810

4.  Molecular models of protein targets from Mycobacterium tuberculosis.

Authors:  Nelson José Freitas da Silveira; Hugo Brandão Uchôa; José Henrique Pereira; Fernanda Canduri; Luiz Augusto Basso; Mário Sérgio Palma; Diógenes Santiago Santos; Walter Filgueira de Azevedo
Journal:  J Mol Model       Date:  2005-03-10       Impact factor: 1.810

5.  Enhanced functional and structural domain assignments using remote similarity detection procedures for proteins encoded in the genome of Mycobacterium tuberculosis H37Rv.

Authors:  Seema Namboori; Natasha Mhatre; Sentivel Sujatha; Narayanaswamy Srinivasan; Shashi Bhushan Pandit
Journal:  J Biosci       Date:  2004-09       Impact factor: 1.826

6.  Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.

Authors:  Eric D Scheeff; Philip E Bourne
Journal:  BMC Bioinformatics       Date:  2006-09-14       Impact factor: 3.169

7.  Current awareness on comparative and functional genomics.

Authors: 
Journal:  Yeast       Date:  2000-09-30       Impact factor: 3.239

  7 in total

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