Literature DB >> 10229569

Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split.

K Ono1, H Suga, N Iwabe, K Kuma, T Miyata.   

Abstract

Protein tyrosine phosphatases (PTPs) regulate various physiological events in animal cells. They comprise a diverse family which are classified into two categories, receptor type and nonreceptor type. From the domain organization and phylogenetic tree, we have classified known PTPs into 17 subtypes (9 receptor-type and 8 nonreceptor-type PTPs) which are characterized by different organization of functional domain and independent cluster in tree. The receptor type PTPs are thought to be implicated in cell-cell adhesion by association of cell adhesion molecules. Since sponges are the most primitive multicellular animals and are thought to be lacking cell cohesiveness and coordination typical of eumetazoans, cloning and sequencing of PTP cDNAs of Ephydatia fluviatilis (freshwater sponge) have been conducted by RT-PCR to determine whether or not sponges have PTP genes in their genomes. We have isolated nine PTPs, of which five are possibly receptor type. A phylogenetic tree including the sponge PTPs revealed that most of the gene duplications that gave rise to the 17 subtypes had been completed in the very early evolution of animals before the parazoan-eumetazoan split, the earliest branching among extant animal phyla. The family tree also revealed the rapid evolutionary rate of PTP subtypes in the early stage of animal evolution.

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Year:  1999        PMID: 10229569     DOI: 10.1007/pl00006509

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  8 in total

Review 1.  Structural and evolutionary relationships among protein tyrosine phosphatase domains.

Authors:  J N Andersen; O H Mortensen; G H Peters; P G Drake; L F Iversen; O H Olsen; P G Jansen; H S Andersen; N K Tonks; N P Møller
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

Review 2.  Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates.

Authors:  Lars-Gustav Lundin; Dan Larhammar; Finn Hallböök
Journal:  J Struct Funct Genomics       Date:  2003

3.  Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved.

Authors:  Vladimir N Babenko; Dmitri M Krylov
Journal:  Nucleic Acids Res       Date:  2004-09-24       Impact factor: 16.971

4.  Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans.

Authors:  Matija Harcet; Masa Roller; Helena Cetković; Drago Perina; Matthias Wiens; Werner E G Müller; Kristian Vlahovicek
Journal:  Mol Biol Evol       Date:  2010-07-09       Impact factor: 16.240

5.  Genomic organization and alternative splicing of the human and mouse RPTPrho genes.

Authors:  J A Besco; A Frostholm; M C Popesco; A H Burghes; A Rotter
Journal:  BMC Genomics       Date:  2001-06-08       Impact factor: 3.969

6.  Phosphotyrosine phosphatase R3 receptors: Origin, evolution and structural diversification.

Authors:  Javier U Chicote; Rob DeSalle; Antonio García-España
Journal:  PLoS One       Date:  2017-03-03       Impact factor: 3.240

7.  Src signaling in a low-complexity unicellular kinome.

Authors:  Hiroshi Suga; W Todd Miller
Journal:  Sci Rep       Date:  2018-03-29       Impact factor: 4.379

8.  Genomic structure and alternative splicing of murine R2B receptor protein tyrosine phosphatases (PTPkappa, mu, rho and PCP-2).

Authors:  Julie Besco; Magdalena C Popesco; Ramana V Davuluri; Adrienne Frostholm; Andrej Rotter
Journal:  BMC Genomics       Date:  2004-02-11       Impact factor: 3.969

  8 in total

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