Literature DB >> 1022832

Analysis of biochemical phase shift oscillators by a harmonic balancing technique.

P Rapp.   

Abstract

The use of harmonic balancing techniques for theoretically investigating a large class of biochemical phase shift oscillators is outlined and the accuracy of this approximate technique for large dimension nonlinear chemical systems is considered. It is concluded that for the equations under study these techniques can be successfully employed to both find periodic solutions and to indicate those cases which can not oscillate. The technique is a general one and it is possible to state a step by step procedure for its application. It has a substantial advantage in producing results which are immediately valid for arbitrary dimension. As the accuracy of the method increases with dimension, it complements classical small dimension methods. The results obtained by harmonic balancing analysis are compared with those obtained by studying the local stability properties of the singular points of the differential equation. A general theorem is derived which identifies those special cases where the results of first order harmonic balancing are identical to those of local stability analysis, and a necessary condition for this equivalence is derived. As a concrete example, the n-dimensional Goodwin oscillator is considered where p, the Hill coefficient of the feedback metabolite, is equal to three and four. It is shown that for p = 3 or 4 and n less than or equal to 4 the approximation indicates that it is impossible to construct a set of physically permissible reaction constants such that the system possesses a periodic solution. However for n greater than or equal to 5 it is always possible to find a large domain in the reaction constant space giving stable oscillations. A means of constructing such a parameter set is given. The results obtained here are compared with previously derived results for p = 1 and p = 2.

Entities:  

Mesh:

Year:  1976        PMID: 1022832     DOI: 10.1007/BF00275057

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  6 in total

1.  Analytic procedures for large dimention nonlinear biochemical oscillators.

Authors:  P Rapp
Journal:  Biosystems       Date:  1975-07       Impact factor: 1.973

2.  Mathematics of cellular control processes. I. Negative feedback to one gene.

Authors:  J S Griffith
Journal:  J Theor Biol       Date:  1968-08       Impact factor: 2.691

3.  Stability of controlled biological systems.

Authors:  C Walter
Journal:  J Theor Biol       Date:  1969-04       Impact factor: 2.691

4.  Oscillations in controlled biochemical systems.

Authors:  C Walter
Journal:  Biophys J       Date:  1969-07       Impact factor: 4.033

5.  The absolute stability of certain types of controlled biological systems.

Authors:  C Walter
Journal:  J Theor Biol       Date:  1969-04       Impact factor: 2.691

6.  Oscillatory behavior in enzymatic control processes.

Authors:  B C Goodwin
Journal:  Adv Enzyme Regul       Date:  1965
  6 in total
  8 in total

1.  Effect of overall feedback inhibition in unbranched biosynthetic pathways.

Authors:  R Alves; M A Savageau
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

Review 2.  Circadian mRNA expression: insights from modeling and transcriptomics.

Authors:  Sarah Lück; Pål O Westermark
Journal:  Cell Mol Life Sci       Date:  2015-10-26       Impact factor: 9.261

3.  Effect of enzyme organization on the stability of Yates-Pardee pathways.

Authors:  R Costalat; J Burger
Journal:  Bull Math Biol       Date:  1996-07       Impact factor: 1.758

4.  Hypothalamic regulation of pituitary secretion of luteinizing hormone. II. Feedback control of gonadotropin secretion.

Authors:  W R Smith
Journal:  Bull Math Biol       Date:  1980       Impact factor: 1.758

5.  On the stability of equilibria in metabolic feedback systems.

Authors:  C Berding; G Haubs
Journal:  J Math Biol       Date:  1985       Impact factor: 2.259

6.  Model of the Ca2+ oscillator for shuttle streaming in Physarum polycephalum.

Authors:  D A Smith; R Saldana
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

7.  Homogeneous Time Constants Promote Oscillations in Negative Feedback Loops.

Authors:  Franco Blanchini; Christian Cuba Samaniego; Elisa Franco; Giulia Giordano
Journal:  ACS Synth Biol       Date:  2018-05-14       Impact factor: 5.110

8.  Quantification of circadian rhythms in single cells.

Authors:  Pål O Westermark; David K Welsh; Hitoshi Okamura; Hanspeter Herzel
Journal:  PLoS Comput Biol       Date:  2009-11-26       Impact factor: 4.475

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.