Literature DB >> 10220318

Backbone dynamics of Fusarium solani pisi cutinase probed by nuclear magnetic resonance: the lack of interfacial activation revisited.

J J Prompers1, A Groenewegen, C W Hilbers, H A Pepermans.   

Abstract

The backbone dynamics of Fusarium solani pisi cutinase has been studied by a variety of nuclear magnetic resonance experiments to probe internal motions on different time scales. The core of cutinase appears to be highly rigid. The binding site, including the oxyanion hole, is mobile on the microsecond to millisecond time scale, in contrast to the well-defined active site and preformed oxyanion hole elucidated by X-ray crystallography [Martinez, C., de Geus, P., Lauwereys, M., Matthyssens, G., and Cambillau, C. (1992) Nature 356, 615-618]. In this crystal structure, cutinase has a rather open conformation, in which the hydrophobic binding site is exposed. The observed mobility in solution most likely represents the interconversion between open and more closed conformations, like in a true lipase. The opening and closing motions are on a time scale which corresponds with the kinetics of the hydrolysis reaction, i.e., the millisecond range, which suggests that these conformational rearrangements form the rate-limiting step in catalysis. We conclude that the crystal structure probably represents one of the multiple conformations present in solution, which fortuitously is the active conformation. The implications of our findings are discussed with particular reference to the explanation of the lack of interfacial activation as found for cutinase.

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Year:  1999        PMID: 10220318     DOI: 10.1021/bi9827215

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Comparative NMR study on the impact of point mutations on protein stability of Pseudomonas mendocina lipase.

Authors:  Nathalie Sibille; Adrien Favier; Ana I Azuaga; Grant Ganshaw; Richard Bott; Alexandre M J J Bonvin; Rolf Boelens; Nico A J van Nuland
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

2.  Crystallization and preliminary X-ray analysis of recombinant Glomerella cingulata cutinase.

Authors:  Mun Peak Nyon; David W Rice; John M Berrisford; Huazhang Huang; Arthur J G Moir; C Jeremy Craven; Sheila Nathan; Nor Muhammad Mahadi; Farah Diba Abu Bakar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-05-23

3.  Backbone dynamics of free barnase and its complex with barstar determined by 15N NMR relaxation study.

Authors:  S C Sahu; A K Bhuyan; J B Udgaonkar; R V Hosur
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

4.  Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase.

Authors:  Tobias Fecker; Pablo Galaz-Davison; Felipe Engelberger; Yoshie Narui; Marcos Sotomayor; Loreto P Parra; César A Ramírez-Sarmiento
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

5.  Analysis of the internal motion of free and ligand-bound human lysozyme by use of 15N NMR relaxation measurement: a comparison with those of hen lysozyme.

Authors:  S Mine; T Ueda; Y Hashimoto; T Imoto
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

6.  Distinction between esterases and lipases: a kinetic study with vinyl esters and TAG.

Authors:  Henri Chahinian; Lylia Nini; Elisabeth Boitard; Jean-Paul Dubès; Louis-Claude Comeau; Louis Sarda
Journal:  Lipids       Date:  2002-07       Impact factor: 1.880

7.  Purification and characterization of mycobacterial phospholipase A: an activity associated with mycobacterial cutinase.

Authors:  Sarah K Parker; Kathryn M Curtin; Michael L Vasil
Journal:  J Bacteriol       Date:  2007-04-06       Impact factor: 3.490

8.  Thermodynamic and structural investigation of the specific SDS binding of Humicola insolens cutinase.

Authors:  David Kold; Zbigniew Dauter; Anne K Laustsen; Andrzej M Brzozowski; Johan P Turkenburg; Anders D Nielsen; Heidi Koldsø; Evamaria Petersen; Birgit Schiøtt; Leonardo De Maria; Keith S Wilson; Allan Svendsen; Reinhard Wimmer
Journal:  Protein Sci       Date:  2014-06-16       Impact factor: 6.725

  8 in total

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