Literature DB >> 10212985

The solution structure of the N-terminal zinc finger of GATA-1 reveals a specific binding face for the transcriptional co-factor FOG.

K Kowalski1, R Czolij, G F King, M Crossley, J P Mackay.   

Abstract

Zinc fingers (ZnFs) are generally regarded as DNA-binding motifs. However, a number of recent reports have implicated particular ZnFs in the mediation of protein-protein interactions. The N-terminal ZnF of GATA-1 (NF) is one such finger, having been shown to interact with a number of other proteins, including the recently discovered transcriptional co-factor FOG. Here we solve the three-dimensional structure of the NF in solution using multidimensional 1H/15N NMR spectroscopy, and we use 1H/15N spin relaxation measurements to investigate its backbone dynamics. The structure consists of two distorted beta-hairpins and a single alpha-helix, and is similar to that of the C-terminal ZnF of chicken GATA-1. Comparisons of the NF structure with those of other C4-type zinc binding motifs, including hormone receptor and LIM domains, also reveal substantial structural homology. Finally, we use the structure to map the spatial locations of NF residues shown by mutagenesis to be essential for FOG binding, and demonstrate that these residues all lie on a single face of the NF. Notably, this face is well removed from the putative DNA-binding face of the NF, an observation which is suggestive of simultaneous roles for the NF; that is, stabilisation of GATA-1 DNA complexes and recruitment of FOG to GATA-1-controlled promoter regions.

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Year:  1999        PMID: 10212985     DOI: 10.1023/a:1008309602929

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  49 in total

1.  Improved efficiency of protein structure calculations from NMR data using the program DIANA with redundant dihedral angle constraints.

Authors:  P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

2.  Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA.

Authors:  B F Luisi; W X Xu; Z Otwinowski; L P Freedman; K R Yamamoto; P B Sigler
Journal:  Nature       Date:  1991-08-08       Impact factor: 49.962

3.  Arrested development of embryonic red cell precursors in mouse embryos lacking transcription factor GATA-1.

Authors:  Y Fujiwara; C P Browne; K Cunniff; S C Goff; S H Orkin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

4.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

5.  GATA transcription factors associate with a novel class of nuclear bodies in erythroblasts and megakaryocytes.

Authors:  A G Elefanty; M Antoniou; N Custodio; M Carmo-Fonseca; F G Grosveld
Journal:  EMBO J       Date:  1996-01-15       Impact factor: 11.598

6.  Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance.

Authors:  K Wüthrich; M Billeter; W Braun
Journal:  J Mol Biol       Date:  1983-10-05       Impact factor: 5.469

7.  A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules.

Authors:  A Kumar; R R Ernst; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1980-07-16       Impact factor: 3.575

8.  Solution structure of a naturally-occurring zinc-peptide complex demonstrates that the N-terminal zinc-binding module of the Lasp-1 LIM domain is an independent folding unit.

Authors:  A Hammarström; K D Berndt; R Sillard; K Adermann; G Otting
Journal:  Biochemistry       Date:  1996-10-01       Impact factor: 3.162

9.  Key residues characteristic of GATA N-fingers are recognized by FOG.

Authors:  A H Fox; K Kowalski; G F King; J P Mackay; M Crossley
Journal:  J Biol Chem       Date:  1998-12-11       Impact factor: 5.157

10.  Homotypic interactions of chicken GATA-1 can mediate transcriptional activation.

Authors:  H Y Yang; T Evans
Journal:  Mol Cell Biol       Date:  1995-03       Impact factor: 4.272

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  15 in total

1.  Treble clef finger--a functionally diverse zinc-binding structural motif.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

2.  Structural classification of zinc fingers: survey and summary.

Authors:  S Sri Krishna; Indraneel Majumdar; Nick V Grishin
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

3.  GATA1 directly mediates interactions with closely spaced pseudopalindromic but not distantly spaced double GATA sites on DNA.

Authors:  Lorna Wilkinson-White; Krystal L Lester; Nina Ripin; David A Jacques; J Mitchell Guss; Jacqueline M Matthews
Journal:  Protein Sci       Date:  2015-08-20       Impact factor: 6.725

4.  GATA1 function, a paradigm for transcription factors in hematopoiesis.

Authors:  Rita Ferreira; Kinuko Ohneda; Masayuki Yamamoto; Sjaak Philipsen
Journal:  Mol Cell Biol       Date:  2005-02       Impact factor: 4.272

5.  Structural basis of simultaneous recruitment of the transcriptional regulators LMO2 and FOG1/ZFPM1 by the transcription factor GATA1.

Authors:  Lorna Wilkinson-White; Roland Gamsjaeger; Siavoush Dastmalchi; Beeke Wienert; Philippa H Stokes; Merlin Crossley; Joel P Mackay; Jacqueline M Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

6.  Cross talk between retinoic acid signaling and transcription factor GATA-2.

Authors:  Shinobu Tsuzuki; Kenji Kitajima; Toru Nakano; Annegret Glasow; Arthur Zelent; Tariq Enver
Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

7.  X-linked thrombocytopenia with thalassemia from a mutation in the amino finger of GATA-1 affecting DNA binding rather than FOG-1 interaction.

Authors:  Channing Yu; Kathy K Niakan; Mark Matsushita; George Stamatoyannopoulos; Stuart H Orkin; Wendy H Raskind
Journal:  Blood       Date:  2002-09-15       Impact factor: 22.113

8.  Structural basis for the recognition of ldb1 by the N-terminal LIM domains of LMO2 and LMO4.

Authors:  Janet E Deane; Joel P Mackay; Ann H Y Kwan; Eleanor Y M Sum; Jane E Visvader; Jacqueline M Matthews
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

9.  Tandem LIM domains provide synergistic binding in the LMO4:Ldb1 complex.

Authors:  Janet E Deane; Daniel P Ryan; Margaret Sunde; Megan J Maher; J Mitchell Guss; Jane E Visvader; Jacqueline M Matthews
Journal:  EMBO J       Date:  2004-09-02       Impact factor: 11.598

10.  Context-dependent regulation of GATA-1 by friend of GATA-1.

Authors:  Danielle L Letting; Ying-Yu Chen; Carrie Rakowski; Sarah Reedy; Gerd A Blobel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-26       Impact factor: 11.205

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