Literature DB >> 10204393

Simulation of vessel morphogenesis using cellular automata.

M Markus1, D Böhm, M Schmick.   

Abstract

We present a cellular automaton model, including lateral inhibition of an autocatalytic morphogen, as well as a genetic switch that differentiates tissue into substrate-depleting vessels. This model yields isotropic morphogenesis, including: dichotomous and lateral branching, blind vessel ends, and closed loops due to anastosmosis. The algorithm consists of a list of simple rules describing the essential biophysical features, permitting comfortable programming and fast computations. Depending on the choice of the substrate s, the model is applicable to leaf veins (s is auxin), insect trachea (s is CO2) or neovascularization (s is an angiogenesis factor). Sequential addition of rules can be correlated to evolutionary steps in leaf morphogenesis.

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Year:  1999        PMID: 10204393     DOI: 10.1016/s0025-5564(98)10066-4

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  8 in total

Review 1.  Harnessing systems biology approaches to engineer functional microvascular networks.

Authors:  Lauren S Sefcik; Jennifer L Wilson; Jason A Papin; Edward A Botchwey
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2.  A self-organized synthetic morphogenic liposome responds with shape changes to local light cues.

Authors:  Konstantin Gavriljuk; Bruno Scocozza; Farid Ghasemalizadeh; Hans Seidel; Akhilesh P Nandan; Manuel Campos-Medina; Malte Schmick; Aneta Koseska; Philippe I H Bastiaens
Journal:  Nat Commun       Date:  2021-03-09       Impact factor: 14.919

3.  Promotion of variant human mammary epithelial cell outgrowth by ionizing radiation: an agent-based model supported by in vitro studies.

Authors:  Rituparna Mukhopadhyay; Sylvain V Costes; Alexey V Bazarov; William C Hines; Mary Helen Barcellos-Hoff; Paul Yaswen
Journal:  Breast Cancer Res       Date:  2010-02-10       Impact factor: 6.466

4.  Tumor angiogenesis and vascular patterning: a mathematical model.

Authors:  Rui D M Travasso; Eugenia Corvera Poiré; Mario Castro; Juan Carlos Rodríguez-Manzaneque; Juan Carlos Rodrguez-Manzaneque; A Hernández-Machado
Journal:  PLoS One       Date:  2011-05-27       Impact factor: 3.240

5.  Modelling multi-scale cell-tissue interaction of tissue-engineered muscle constructs.

Authors:  Ryo Torii; Rallia-Iliana Velliou; David Hodgson; Vivek Mudera
Journal:  J Tissue Eng       Date:  2018-08-13       Impact factor: 7.813

6.  Computer simulation analysis of normal and abnormal development of the mammalian diaphragm.

Authors:  Jason C Fisher; Lawrence Bodenstein
Journal:  Theor Biol Med Model       Date:  2006-02-17       Impact factor: 2.432

7.  Tumour angiogenesis as a chemo-mechanical surface instability.

Authors:  Chiara Giverso; Pasquale Ciarletta
Journal:  Sci Rep       Date:  2016-03-07       Impact factor: 4.379

8.  Shapes of leaves with parallel venation. Modelling of the Epipactis sp. (Orchidaceae) leaves with the help of a system of coupled elastic beams.

Authors:  Anna Jakubska-Busse; Maciej Janowicz; Luiza Ochnio; Beata Jackowska-Zduniak
Journal:  PeerJ       Date:  2016-06-28       Impact factor: 2.984

  8 in total

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