Literature DB >> 10198215

Determination of mean and standard deviation of dihedral angles.

R Döker1, T Maurer, W Kremer, K Neidig, H R Kalbitzer.   

Abstract

Backbone torsional angles are a characteristic and useful parameter for the description and characterisation of protein structures determined by x-ray crystallography or NMR spectroscopy. For the comparison of an ensemble of three-dimensional structures the calculation of the statistical parameters mean and standard deviation would be very useful. However, they are not defined unambiguously for periodic quantities such as the dihedral angles. In this paper a plausible and unique definition of these parameters is introduced and a straightforward method for their calculation is given. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10198215     DOI: 10.1006/bbrc.1999.0462

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  4 in total

1.  Protein structure calculation with data imputation: the use of substitute restraints.

Authors:  Carolina Cano; Konrad Brunner; Kumaran Baskaran; Ralph Elsner; Claudia E Munte; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2009-10-17       Impact factor: 2.835

2.  Homology modeling and molecular dynamics simulations of MUC1-9/H-2K(b) complex suggest novel binding interactions.

Authors:  Athanassios Stavrakoudis; Ioannis G Tsoulos; Katalin Uray; Ferenc Hudecz; Vasso Apostolopoulos
Journal:  J Mol Model       Date:  2010-11-16       Impact factor: 1.810

3.  A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles.

Authors:  Andreas Möglich; Daniel Weinfurtner; Till Maurer; Wolfram Gronwald; Hans Robert Kalbitzer
Journal:  BMC Bioinformatics       Date:  2005-04-08       Impact factor: 3.169

4.  A general method for the unbiased improvement of solution NMR structures by the use of related X-ray data, the AUREMOL-ISIC algorithm.

Authors:  Konrad Brunner; Wolfram Gronwald; Jochen M Trenner; Klaus-Peter Neidig; Hans Robert Kalbitzer
Journal:  BMC Struct Biol       Date:  2006-06-26
  4 in total

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