Literature DB >> 10191250

Identification of the Mg2+-binding site in the P-type ATPase and phosphatase members of the HAD (haloacid dehalogenase) superfamily by structural similarity to the response regulator protein CheY.

I S Ridder1, B W Dijkstra.   

Abstract

The large HAD (haloacid dehalogenase) superfamily of hydrolases comprises P-type ATPases, phosphatases, epoxide hydrolases and L-2-haloacid dehalogenases. A comparison of the three-dimensional structure of L-2-haloacid dehalogenase with that of the response regulator protein CheY allowed the assignment of a conserved pair of aspartate residues as the Mg2+-binding site in the P-type ATPase and phosphatase members of the superfamily. From the resulting model of the active site, a conserved serine/threonine residue is suggested to be involved in phosphate binding, and a mechanism comprising a phosphoaspartate intermediate is postulated.

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Year:  1999        PMID: 10191250      PMCID: PMC1220148     

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  33 in total

1.  Structure of the calcium pump from sarcoplasmic reticulum at 8-A resolution.

Authors:  P Zhang; C Toyoshima; K Yonekura; N M Green; D L Stokes
Journal:  Nature       Date:  1998-04-23       Impact factor: 49.962

2.  Three-dimensional map of the plasma membrane H+-ATPase in the open conformation.

Authors:  M Auer; G A Scarborough; W Kühlbrandt
Journal:  Nature       Date:  1998-04-23       Impact factor: 49.962

3.  Human L-3-phosphoserine phosphatase: sequence, expression and evidence for a phosphoenzyme intermediate.

Authors:  J F Collet; I Gerin; M H Rider; M Veiga-da-Cunha; E Van Schaftingen
Journal:  FEBS Lett       Date:  1997-05-26       Impact factor: 4.124

4.  Magnesium binding to the bacterial chemotaxis protein CheY results in large conformational changes involving its functional surface.

Authors:  L Bellsolell; J Prieto; L Serrano; M Coll
Journal:  J Mol Biol       Date:  1994-05-13       Impact factor: 5.469

5.  Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search.

Authors:  E V Koonin; R L Tatusov
Journal:  J Mol Biol       Date:  1994-11-18       Impact factor: 5.469

6.  Purification and Characterization of Phosphoglycolate Phosphatase from the Cyanobacterium Coccochloris peniocystis.

Authors:  E G Norman; B Colman
Journal:  Plant Physiol       Date:  1991-03       Impact factor: 8.340

7.  Characterization of trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase of Saccharomyces cerevisiae.

Authors:  A Vandercammen; J François; H G Hers
Journal:  Eur J Biochem       Date:  1989-07-01

8.  Identification of an extracytoplasmic region of H+,K(+)-ATPase labeled by a K(+)-competitive photoaffinity inhibitor.

Authors:  K B Munson; C Gutierrez; V N Balaji; K Ramnarayan; G Sachs
Journal:  J Biol Chem       Date:  1991-10-05       Impact factor: 5.157

9.  Structure of the Mg(2+)-bound form of CheY and mechanism of phosphoryl transfer in bacterial chemotaxis.

Authors:  A M Stock; E Martinez-Hackert; B F Rasmussen; A H West; J B Stock; D Ringe; G A Petsko
Journal:  Biochemistry       Date:  1993-12-14       Impact factor: 3.162

10.  Effect of divalent cation bound to the ATPase of sarcoplasmic reticulum. Activation of phosphoenzyme hydrolysis by Mg2+.

Authors:  M Shigekawa; S Wakabayashi; H Nakamura
Journal:  J Biol Chem       Date:  1983-12-10       Impact factor: 5.157

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  21 in total

1.  Modeling a dehalogenase fold into the 8-A density map for Ca(2+)-ATPase defines a new domain structure.

Authors:  D L Stokes; N M Green
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

Review 2.  Probing the mechanism of enzymatic phosphoryl transfer with a chemical trick.

Authors:  P R Thompson; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

3.  Structural identification of cation binding pockets in the plasma membrane proton pump.

Authors:  Kira Ekberg; Bjørn P Pedersen; Danny M Sørensen; Ann K Nielsen; Bjarke Veierskov; Poul Nissen; Michael G Palmgren; Morten J Buch-Pedersen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

4.  OsHAD1, a Haloacid Dehalogenase-Like APase, Enhances Phosphate Accumulation.

Authors:  Bipin K Pandey; Poonam Mehra; Lokesh Verma; Jyoti Bhadouria; Jitender Giri
Journal:  Plant Physiol       Date:  2017-06-21       Impact factor: 8.340

5.  BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase.

Authors:  H Cho; W Wang; R Kim; H Yokota; S Damo; S H Kim; D Wemmer; S Kustu; D Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

6.  Accuracy analysis of multiple structure alignments.

Authors:  Christoph Berbalk; Christine S Schwaiger; Peter Lackner
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

7.  Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.

Authors:  Deepak Bandyopadhyay; Jun Huan; Jan Prins; Jack Snoeyink; Wei Wang; Alexander Tropsha
Journal:  J Comput Aided Mol Des       Date:  2009-06-23       Impact factor: 3.686

8.  The crystal structure of the lipid II-degrading bacteriocin syringacin M suggests unexpected evolutionary relationships between colicin M-like bacteriocins.

Authors:  Rhys Grinter; Aleksander W Roszak; Richard J Cogdell; Joel J Milner; Daniel Walker
Journal:  J Biol Chem       Date:  2012-09-20       Impact factor: 5.157

9.  Structure and mechanism of a bacterial haloalcohol dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site.

Authors:  R M de Jong; J J W Tiesinga; H J Rozeboom; K H Kalk; L Tang; D B Janssen; B W Dijkstra
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

10.  1.9 A structure of the signal receiver domain of the putative response regulator NarL from Mycobacterium tuberculosis.

Authors:  Robert Schnell; Daniel Agren; Gunter Schneider
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28
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