Literature DB >> 10099253

Molecular-modeling calculations of enzymatic enantioselectivity taking hydration into account.

T Ke1, B Tidor, A M Klibanov.   

Abstract

A new molecular-modeling methodology has been applied to explain enzymatic enantioselectivity in water. This methodology, which combines vacuum molecular mechanics and the continuum solvation method, should provide a more realistic view of the solvent-enzyme and solvent-substrate interactions than the heretofore used approaches involving the vacuum molecular mechanics only. The methodology described herein has been validated using the experimental data on alpha-chymotrypsin's enantioselectivity in the hydrolysis of four chiral substrates. The reasons why the vacuum molecular mechanics, although not taking hydration into account, still in most cases provide a satisfactory approximation of reality are discussed. Copyright 1998 John Wiley & Sons, Inc.

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Year:  1998        PMID: 10099253     DOI: 10.1002/(sici)1097-0290(19980320)57:6<741::aid-bit11>3.0.co;2-a

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  4 in total

1.  Rational design of enantioselective enzymes requires considerations of entropy.

Authors:  J Ottosson; J C Rotticci-Mulder; D Rotticci; K Hult
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

2.  To Keep or Not to Keep? The Question of Crystallographic Waters for Enzyme Simulations in Organic Solvent.

Authors:  Jayangika N Dahanayake; Devaki N Gautam; Rajni Verma; Katie R Mitchell-Koch
Journal:  Mol Simul       Date:  2016-03-22       Impact factor: 2.178

3.  Water dependent properties of cutinase in nonaqueous solvents: a computational study of enantioselectivity.

Authors:  Nuno M Micaelo; Vitor H Teixeira; António M Baptista; Cláudio M Soares
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

4.  Enantioselectivity in Candida antarctica lipase B: a molecular dynamics study.

Authors:  S Raza; L Fransson; K Hult
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

  4 in total

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