Literature DB >> 10095763

The role of water structure in conformational changes of nucleic acids in ambient and high-pressure conditions.

J Barciszewski1, J Jurczak, S Porowski, T Specht, V A Erdmann.   

Abstract

This review describes and summarizes data on the structure and properties of water under normal conditions, at high salt concentration and under high pressure. We correlate the observed conformational changes in nucleic acids with changes in water structure and activity, and suggest a mechanism of conformational transitions of nucleic acids which accounts for changes in the water structure. From the biophysical, biochemical and crystallographic data we conclude that the Z-DNA form can be induced only at low water activity produced by high salt concentrations or high pressure, and accompanied by the stabilizing conjugative effect of the cytidine O4' electrons of the CG base pairs.

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Year:  1999        PMID: 10095763     DOI: 10.1046/j.1432-1327.1999.00184.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  11 in total

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3.  The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity.

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4.  Effect of high hydrostatic pressure on hydration and activity of ribozymes.

Authors:  Małgorzata Giel-Pietraszuk; Agnieszka Fedoruk-Wyszomirska; Jan Barciszewski
Journal:  Mol Biol Rep       Date:  2010-03-04       Impact factor: 2.316

5.  The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove.

Authors:  D A Adamiak; W R Rypniewski; J Milecki; R W Adamiak
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

6.  An SOS response induced by high pressure in Escherichia coli.

Authors:  Abram Aertsen; Rob Van Houdt; Kristof Vanoirbeek; Chris W Michiels
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7.  High salt solution structure of a left-handed RNA double helix.

Authors:  Mariusz Popenda; Jan Milecki; Ryszard W Adamiak
Journal:  Nucleic Acids Res       Date:  2004-08-03       Impact factor: 16.971

8.  Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface.

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9.  The catalytic mechanism of hairpin ribozyme studied by hydrostatic pressure.

Authors:  Sylvia Tobé; Thomas Heams; Jacques Vergne; Guy Hervé; Marie-Christine Maurel
Journal:  Nucleic Acids Res       Date:  2005-05-03       Impact factor: 16.971

10.  Adaptation of the base-paired double-helix molecular architecture to extreme pressure.

Authors:  Eric Girard; Thierry Prangé; Anne-Claire Dhaussy; Evelyne Migianu-Griffoni; Marc Lecouvey; Jean-Claude Chervin; Mohamed Mezouar; Richard Kahn; Roger Fourme
Journal:  Nucleic Acids Res       Date:  2007-07-07       Impact factor: 16.971

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