Literature DB >> 10089203

TargetFinder: searching annotated sequence databases for target genes of transcription factors.

G Lavorgna1, A Guffanti, G Borsani, A Ballabio, E Boncinelli.   

Abstract

UNLABELLED: TargetFinder is a new software tool to search a database of annotated sequences for transcription factor binding sites located in context with other important transcription regulatory signals and regions, like the TATA element, the promoter, and so on, thereby greatly reducing the background usually associated with this kind of search. AVAILABILITY: The TargetFinder Web service is available at http://hercules.tigem.it/TargetFinder.html CONTACT: giovanni.lavorgna@hsr.it

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Year:  1999        PMID： 10089203     DOI： 10.1093/bioinformatics/15.2.172

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

1.  PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches.

Authors:  W Fujibuchi; J S Anderson; D Landsman
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

2.  Local insulin-like growth factor I expression is essential for Purkinje neuron survival at birth.

Authors:  L Croci; V Barili; D Chia; L Massimino; R van Vugt; G Masserdotti; R Longhi; P Rotwein; G G Consalez
Journal:  Cell Death Differ       Date:  2010-07-02       Impact factor: 15.828

3.  Identification and characterization of microRNAs in Eucheuma denticulatum by high-throughput sequencing and bioinformatics analysis.

Authors:  Fan Gao; Fangru Nan; Jia Feng; Junping Lv; Qi Liu; Shulian Xie
Journal:  RNA Biol       Date:  2015-12-30       Impact factor: 4.652

4.  To Be a Flower or Fruiting Branch: Insights Revealed by mRNA and Small RNA Transcriptomes from Different Cotton Developmental Stages.

Authors:  Quan Sun; Xiongming Du; Chaowei Cai; Lu Long; Sai Zhang; Peng Qiao; Weina Wang; Kexue Zhou; Guanghao Wang; Xin Liu; Hui Zhang; Shuaipeng Geng; Can Yang; Wei Gao; Jianchuan Mo; Chen Miao; Chunpeng Song; Yingfan Cai
Journal:  Sci Rep       Date:  2016-03-17       Impact factor: 4.379

5.  Combined analysis of mRNA and miRNA identifies dehydration and salinity responsive key molecular players in citrus roots.

Authors:  Rangjin Xie; Jin Zhang; Yanyan Ma; Xiaoting Pan; Cuicui Dong; Shaoping Pang; Shaolan He; Lie Deng; Shilai Yi; Yongqiang Zheng; Qiang Lv
Journal:  Sci Rep       Date:  2017-02-06       Impact factor: 4.379

6.  Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill.

Authors:  Hua Yang; Chengran Zhou; Guolin Li; Jing Wang; Ping Gao; Maolin Wang; Rui Wang; Yun Zhao
Journal:  Sci Data       Date:  2019-09-24       Impact factor: 6.444

7.  Integrated Transcriptome and Targeted Metabolite Analysis Reveal miRNA-mRNA Networks in Low-Light-Induced Lotus Flower Bud Abortion.

Authors:  Huihui Ren; Yingchun Xu; Hongsheng Lixie; Jiaying Kuang; Yanjie Wang; Qijiang Jin
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

8.  Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to Ca2+ Channel Blocker.

Authors:  Keshi Ma; Wenshuo Shi; Mengyue Xu; Jiaxi Liu; Feixiong Zhang
Journal:  Front Plant Sci       Date:  2018-03-06       Impact factor: 5.753

9.  Exploration of ABA Responsive miRNAs Reveals a New Hormone Signaling Crosstalk Pathway Regulating Root Growth of Populus euphratica.

Authors:  Conglong Lian; Kun Yao; Hui Duan; Qing Li; Chao Liu; Weilun Yin; Xinli Xia
Journal:  Int J Mol Sci       Date:  2018-05-16       Impact factor: 5.923

10.  Dicer-Like Proteins Regulate Sexual Development via the Biogenesis of Perithecium-Specific MicroRNAs in a Plant Pathogenic Fungus Fusarium graminearum.

Authors:  Wenping Zeng; Jie Wang; Ying Wang; Jing Lin; Yanping Fu; Jiatao Xie; Daohong Jiang; Tao Chen; Huiquan Liu; Jiasen Cheng
Journal:  Front Microbiol       Date:  2018-04-26       Impact factor: 5.640
  10 in total

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