Literature DB >> 10087930

mRNA degradation. A tale of poly(A) and multiprotein machines.

A J Carpousis1, N F Vanzo, L C Raynal.   

Abstract

The Escherichia coli RNA degradosome is a multiprotein complex containing an endoribonuclease, polynucleotide phosphorylase and a DEAD-box RNA helicase. A related complex has been described in the spinach chloroplast. The exosome and the mtEXO complex have recently been described in yeast and it is likely that related complexes also exist in animal cells. This research suggests the widespread existence of sophisticated machines for the efficient degradation of messenger RNA. The DEAD-box helicase in the degradosome can unwind regions of RNA structure that interfere with 3'-5' degradation. The polyadenylation of RNA 3' ends is also known to promote degradation by creating a 'toehold' for the degradation machinery. Much remains to be learned about the regulation of mRNA stability. The complexity of the degradation process, both in the eubacteria and in the eukaryotes, suggests that many steps are possible points of control.

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Year:  1999        PMID: 10087930     DOI: 10.1016/s0168-9525(98)01627-8

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  70 in total

1.  Transcript lifetime is balanced between stabilizing stem-loop structures and degradation-promoting polyadenylation in plant mitochondria.

Authors:  J Kuhn; U Tengler; S Binder
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

2.  Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli.

Authors:  A P Walsh; M R Tock; M H Mallen; V R Kaberdin; A von Gabain; K J McDowall
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

3.  Unpaired terminal nucleotides and 5' monophosphorylation govern 3' polyadenylation by Escherichia coli poly(A) polymerase I.

Authors:  Y Feng; S N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 4.  Emerging features of mRNA decay in bacteria.

Authors:  D A Steege
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

5.  An mRNA degrading complex in Rhodobacter capsulatus.

Authors:  S Jäger; O Fuhrmann; C Heck; M Hebermehl; E Schiltz; R Rauhut; G Klug
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

Review 6.  The 3' end formation in small RNAs.

Authors:  Karthika Perumal; Ram Reddy
Journal:  Gene Expr       Date:  2002

7.  RNA quality control: degradation of defective transfer RNA.

Authors:  Zhongwei Li; Stephan Reimers; Shilpa Pandit; Murray P Deutscher
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

8.  PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts.

Authors:  Michael Walter; Joachim Kilian; Jörg Kudla
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

9.  Tobacco VDL gene encodes a plastid DEAD box RNA helicase and is involved in chloroplast differentiation and plant morphogenesis.

Authors:  Y Wang; G Duby; B Purnelle; M Boutry
Journal:  Plant Cell       Date:  2000-11       Impact factor: 11.277

10.  5-fluorouracil enhances exosome-dependent accumulation of polyadenylated rRNAs.

Authors:  Feng Fang; Jason Hoskins; J Scott Butler
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

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