Literature DB >> 10076869

Synthesis of long trinucleotide repeats in vitro.

N Takahashi1, N Sasagawa, K Suzuki, S Ishiura.   

Abstract

More than a dozen diseases have been associated with the expansion of trinucleotide repeats. Most of these expanding repeats are GC-rich (CGG/CCG or CTG/CAG), but it is difficult to amplify GC-rich repeat DNA from patient samples by the polymerase chain reaction. We invented a pair of methods to synthesize long trinucleotide repeats in vitro by polymerase extension utilizing a thermal cycler. A combination of the two methods, termed the non-template PCR method and SLIP (Synthesis of Long Iterative Polynucleotide) method, produced (CTG/CAG)190 repeat DNA. We expect that these two methods will contribute to studies of all diseases associated with tri-nucleotide repeat expansion, since they can be applied to any type of repeat DNA.

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Year:  1999        PMID: 10076869     DOI: 10.1016/s0304-3940(99)00031-2

Source DB:  PubMed          Journal:  Neurosci Lett        ISSN: 0304-3940            Impact factor:   3.046


  7 in total

1.  Directed PCR-free engineering of highly repetitive DNA sequences.

Authors:  Annika Scior; Steffen Preissler; Miriam Koch; Elke Deuerling
Journal:  BMC Biotechnol       Date:  2011-09-23       Impact factor: 2.563

2.  Efficient isothermal expansion of human telomeric and minisatellite repeats by Thermococcus litoralis DNA polymerase.

Authors:  Jörg S Hartig; Eric T Kool
Journal:  Nucleic Acids Res       Date:  2005-09-02       Impact factor: 16.971

3.  In Vitro Expansion of CAG, CAA, and Mixed CAG/CAA Repeats.

Authors:  Grzegorz Figura; Edyta Koscianska; Wlodzimierz J Krzyzosiak
Journal:  Int J Mol Sci       Date:  2015-08-11       Impact factor: 5.923

4.  R-Loop Formation In Trans at an AGGAG Repeat.

Authors:  Kazuya Toriumi; Takuma Tsukahara; Ryo Hanai
Journal:  J Nucleic Acids       Date:  2013-08-26

5.  Cooperation meets competition in microRNA-mediated DMPK transcript regulation.

Authors:  Edyta Koscianska; Tomasz M Witkos; Emilia Kozlowska; Marzena Wojciechowska; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2015-08-24       Impact factor: 16.971

6.  Degenerate codon mixing for PCR-based manipulation of highly repetitive sequences.

Authors:  Dhanushika Ratnayake; Morgan Newman; Michael Lardelli
Journal:  BMC Res Notes       Date:  2018-03-27

7.  Artificial miRNAs targeting CAG repeat expansion in ORFs cause rapid deadenylation and translation inhibition of mutant transcripts.

Authors:  Adam Ciesiolka; Anna Stroynowska-Czerwinska; Paweł Joachimiak; Agata Ciolak; Emilia Kozlowska; Michal Michalak; Magdalena Dabrowska; Marta Olejniczak; Katarzyna D Raczynska; Dominika Zielinska; Magdalena Wozna-Wysocka; Wlodzimierz J Krzyzosiak; Agnieszka Fiszer
Journal:  Cell Mol Life Sci       Date:  2020-07-21       Impact factor: 9.261

  7 in total

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