Literature DB >> 10049623

A standard deviation based quantification differentiates coding from non-coding DNA sequences and gives insight to their evolutionary history.

Y Almirantis1.   

Abstract

A method quantifying the randomness of nucleotide sequences is developed, based on the introduction of a standard deviation type of quantity involving locally computed means and a length scale around which is assessed the clustering of nucleotides. It is pointed out that the value taken by this modified standard deviation may distinguish between coding rich and non-coding rich sequences. Moreover, the approach described herein allows the determination of some minimal characteristics of an evolutionary scenario which can account for the origin of the clustering in the nucleotide distribution of the different parts of the genome.

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Year:  1999        PMID: 10049623     DOI: 10.1006/jtbi.1998.0840

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  2 in total

1.  "Word" preference in the genomic text and genome evolution: different modes of n-tuplet usage in coding and noncoding sequences.

Authors:  Christoforos Nikolaou; Yannis Almirantis
Journal:  J Mol Evol       Date:  2005-07-19       Impact factor: 2.395

2.  Estimating the fraction of non-coding RNAs in mammalian transcriptomes.

Authors:  Yurong Xin; Giulio Quarta; Hin Hark Gan; Tamar Schlick
Journal:  Bioinform Biol Insights       Date:  2008-03-01
  2 in total

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