Literature DB >> 10025403

Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs.

C Kambach1, S Walke, R Young, J M Avis, E de la Fortelle, V A Raker, R Lührmann, J Li, K Nagai.   

Abstract

The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F, and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs (snRNAs). These proteins share a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Crystal structures of two Sm protein complexes, D3B and D1D2, show that these proteins have a common fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta sheet, and the D1D2 and D3B dimers superpose closely in their core regions, including the dimer interfaces. The crystal structures suggest that the seven Sm proteins could form a closed ring and the snRNAs may be bound in the positively charged central hole.

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Year:  1999        PMID: 10025403     DOI: 10.1016/s0092-8674(00)80550-4

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  188 in total

1.  Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin.

Authors:  J Salgado-Garrido; E Bragado-Nilsson; S Kandels-Lewis; B Séraphin
Journal:  EMBO J       Date:  1999-06-15       Impact factor: 11.598

2.  Characterization of U6 snRNA-protein interactions.

Authors:  V P Vidal; L Verdone; A E Mayes; J D Beggs
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

3.  Spliceosomal U snRNP core assembly: Sm proteins assemble onto an Sm site RNA nonanucleotide in a specific and thermodynamically stable manner.

Authors:  V A Raker; K Hartmuth; B Kastner; R Lührmann
Journal:  Mol Cell Biol       Date:  1999-10       Impact factor: 4.272

4.  The Sm domain is an ancient RNA-binding motif with oligo(U) specificity.

Authors:  T Achsel; H Stark; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

5.  Herpesvirus mRNAs are sorted for export via Crm1-dependent and -independent pathways.

Authors:  T M Soliman; S J Silverstein
Journal:  J Virol       Date:  2000-03       Impact factor: 5.103

6.  Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure.

Authors:  H Urlaub; V A Raker; S Kostka; R Lührmann
Journal:  EMBO J       Date:  2001-01-15       Impact factor: 11.598

7.  Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex.

Authors:  D Zhang; M Rosbash
Journal:  Genes Dev       Date:  1999-03-01       Impact factor: 11.361

8.  Functional characterization of nuclear localization signals in yeast Sm proteins.

Authors:  R Bordonné
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

9.  Symmetrical dimethylation of arginine residues in spliceosomal Sm protein B/B' and the Sm-like protein LSm4, and their interaction with the SMN protein.

Authors:  H Brahms; L Meheus; V de Brabandere; U Fischer; R Lührmann
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

Review 10.  Unconventional rules of small nuclear RNA transcription and cap modification in trypanosomatids.

Authors:  Christian Tschudi; Elisabetta Ullut
Journal:  Gene Expr       Date:  2002
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